Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021311.1 Length=76479 Score E Sequences producing significant alignments: (Bits) Value seq747 147 1e-30 seq939 138 6e-28 >seq747 Length=14078 Score = 147 bits (162), Expect = 1e-30 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66831 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66890 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7505 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7564 Query 66891 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66950 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7565 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7624 Query 66951 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 67010 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 7625 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7684 Query 67011 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 67070 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7685 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTA 7744 Query 67071 ATGTCACAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 67127 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7745 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7802 Query 67128 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 67187 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 7803 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7858 Query 67188 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 67247 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7859 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7918 Query 67248 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 67307 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 7919 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7978 Query 67308 AACAAGCTGGCCCCGCC 67324 ||||||||||| |||| Sbjct 7979 AACAAGCTGGCGTCGCC 7995 >seq939 Length=10641 Score = 138 bits (152), Expect = 6e-28 Identities = 212/300 (71%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 60928 TCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAG--GCCGTCGC 60985 |||| | |||||||| |||||||| || || ||||| | || | || ||||| || Sbjct 9499 TCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC--GTCCGGAGCCGCCGTGGC 9442 Query 60986 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 61042 |||||||||||| | ||||| | ||| | |||| ||| ||||| ||| || Sbjct 9441 CAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAGAGCAACGAGTGGAAAGA 9382 Query 61043 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 61102 | || | ||| | |||||| | | ||||| || || ||||||||||||||||| Sbjct 9381 CCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCGGCCGAGAACGTGGCGGA 9322 Query 61103 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 61162 |||| || ||| ||||| ||||| || ||| ||||||| ||||| | ||| Sbjct 9321 GTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTCAAGGCACGCTCGTACGA 9262 Query 61163 GACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 61222 ||||||||| || || |||||| || |||| |||| || |||||||||||||| || Sbjct 9261 GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTGGACGAGATCGGCCCCTC 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244591967321520