Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq2959 693 0.0 seq5028 306 1e-78 >seq2959 Length=2134 Score = 693 bits (768), Expect = 0.0 Identities = 1236/1785 (69%), Gaps = 53/1785 (3%) Strand=Plus/Plus Query 39383 CACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTC 39442 ||||||||||||||| | ||||| | | || | | ||||||||||| || | ||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 39443 GGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTT 39502 || | |||||||||||| || |||||| ||||| |||||||| || || |||||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 39503 CGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATGTC 39562 ||||| || | ||||||| |||||||| ||||| || |||| | || |||||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 39563 CTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTG 39622 ||||||||||||||| || || |||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 39623 GAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGG 39682 ||| || || ||||| || | ||||||||||||||||| || |||||| | || Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 39683 GATGTTCTCCAGGTCGA---CGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTC 39739 | || ||||||||| | || | | ||||| || ||||||||| | |||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTTCAGCGTGATGTTCTCCAGCGCGTC 378 Query 39740 GCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTC 39799 | |||||||||||||| || ||||| |||||||||||||| | ||| ||||| |||| Sbjct 379 GGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCTC 438 Query 39800 GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGG 39859 ||| | |||||||||||||| |||||| | ||||||||| || | | ||| Sbjct 439 GCACGTGGGGTAGTCGAACTGGGTGATCACCTGACCGTCCTGCTCGCGGCGCATGAGCGG 498 Query 39860 GATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTG 39919 |||| ||||| ||| || || |||||||||||| || || |||||||||||| ||| Sbjct 499 GATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCCACTG 558 Query 39920 CCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGA 39979 || ||| || || || || | || || |||| ||||| | ||| || |||||| Sbjct 559 GCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGTCGTC 618 Query 39980 GCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGA---GGGTGCTCGGCGTTGAA 40036 || | | || | ||| ||||||| ||||| || | || || | ||| || Sbjct 619 CTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGTAGAC 678 Query 40037 GATGCCTTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTT 40096 | ||| | |||| || |||||||| ||||| | ||| |||||||| ||| Sbjct 679 GT--CCTGC-AGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGCCG 735 Query 40097 CTCGCCGACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGC 40156 ||| || | ||| || | | |||||||||| | | |||||| | ||| | || Sbjct 736 CTCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTGGC 795 Query 40157 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGAC 40216 |||||| |||||||| ||||| || || ||| | ||||||||| ||||| Sbjct 796 CTTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTCGCCGTACTTCTCCGTGAC 855 Query 40217 GTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGA 40276 ||| ||||| |||||| || || ||||| |||||||| | ||||| ||||||||||| Sbjct 856 GTAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATGGA 915 Query 40277 CACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTC 40336 |||||| || ||||| ||||||||||||||||| ||||||||| | ||||||| || || Sbjct 916 CACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGCTC 975 Query 40337 GGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396 |||||| | | | |||| || |||| |||||||| | || || || || || || || Sbjct 976 GGTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCCAC 1035 Query 40397 CCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGG 40456 | || ||||| ||||| | |||| ||||||||||||||| || |||||||| || Sbjct 1036 GCGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCGGG 1095 Query 40457 GAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTC 40516 ||| |||||||||||||| || | ||||||||| | ||||| | | ||| ||| Sbjct 1096 GAAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCT---CACGGACGTCGTC 1152 Query 40517 CG---TGCCGTTCGGGTACCGACGACGGGCA--CCTCGATGGACCTCGTCCTCGAACCAG 40571 || | ||| |||| | || | | ||| || | |||||| | |||||| Sbjct 1153 CGGGATCCCGCCCGGGAAGCG--GTAGTGCAGCCCCTTCTCGACCTCCTTGATGAACCAC 1210 Query 40572 GTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCTC----GTGCTC 40627 | | |||| | |||||||||| ||||| |||||| ||| | ||| || Sbjct 1211 GAGGTCTCGTCCTCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGTTGGCGGAGGTG-TC 1269 Query 40628 GAACATGCCCGTGGTGTCGACCATCTCGGCGATCTCCAGCGTGGTCTTCATGCCCCACTG 40687 |||| | | | | | || ||||||||||||||| ||| || | ||| | Sbjct 1270 GAAC-TCCACCTCGCAGCG-----CTCGGCGATCTCCAGGGTG------TTGTCGCAC-G 1316 Query 40688 CCAGATCGGCGAAGAGTCG--ATCGC-CGC-CATCTCTTCGGCGGACTTCAGGTAGTACC 40743 || |||| |||| || | || ||| ||||| |||| |||||| |||||| || Sbjct 1317 CC---TCGGGGAAGTCCCGGAACAGCTCGCGCATCTGCTCGGGGGACTTGAGGTAGAACT 1373 Query 40744 CGGAGCCCTCGAAGCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACA 40803 || | ||||| |||||| || |||| | ||||||| ||||| ||| ||||||| Sbjct 1374 CGTCCGCGTCGAACTTGAAGCGCTTGGGGTCCTGCAGCGTGGAGCCGGACTGCACGCACA 1433 Query 40804 GCAGTGCATCGTGAGCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCA 40863 |||| || |||| | | ||||||||| | |||||| ||||| ||| ||| Sbjct 1434 GCAGCGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGGCCA 1493 Query 40864 CCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCGA 40923 | | | || |||| ||| | || || |||||| | || || ||||| Sbjct 1494 CGAGCGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCTCGA 1553 Query 40924 TCTCGATGTCGTGGTCCATGAGTTCG-AGCAG--GTACCGGTCACGCCCGAAGACCTCCA 40980 | | | |||||||||| |||||| || || || | || |||||||| ||| Sbjct 1554 TGCCCAGCCCGTGGTCCATCAGTTCGCAGTAGAAGTTC---TCCGCCCCGAAGATGTCCC 1610 Query 40981 GGTACCGACCAGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGA 41040 || || | || |||| || |||||||||||||| || || ||||||||| | Sbjct 1611 GGAACTCCGCGGCGGCCTTGACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTCTGCA 1670 Query 41041 TCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGCT 41100 | | ||| |||||||| || ||| ||| || |||| | || || | | ||||| Sbjct 1671 CCTCGCCGGACGGGCAGCCCGTGGTGGCGATGAGCCCCTTGCCGTACTGGTTCAGCAGCT 1730 Query 41101 CGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACG 41145 | ||||||||| || ||| ||| |||||||| || ||| Sbjct 1731 CCCGGTCCATGCGGGG---CTTGTACAGCTGGCCCTCCAGGGACG 1772 >seq5028 Length=1094 Score = 306 bits (338), Expect = 1e-78 Identities = 424/583 (73%), Gaps = 17/583 (3%) Strand=Plus/Minus Query 38786 GTCGAAGGCACCGGCCTTGATCAGGGACTCGATGGCTCGCTTGCT---CACCGTCGCCTG 38842 |||||| ||||||||||||| || ||||||||||| |||||| | |||| |||| | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTTGCACACCACCGCCGG 522 Query 38843 AGTCGCTGCCTTCAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGC-TTCCCGGAGTT 38901 | | ||| |||||||| | ||| |||||||||||| | || | || || Sbjct 521 AACCTTGGCC---AGGAAGTCGTTGAAGGACGTGAACTTCCCCTGCTCGTTGCGGGCGTC 465 Query 38902 CAGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGA 38961 || | || || ||||| | |||||||||| ||| ||| || |||||||||| Sbjct 464 CACC-ATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCGGA 406 Query 38962 TCTCG-TGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC-CGA-CACGTCGGGCGGCA 39018 | ||| ||| | | | ||||||| | | | ||| ||| || |||||| ||||||| Sbjct 405 TGTCGGTGCCCACAG----GGGTGAA-GTTCAGCTCG-GACTCGTTCACGTCCGGCGGCA 352 Query 39019 GGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGT 39078 | ||| | ||||||| | || |||| ||||||| |||||| ||||| |||||||| Sbjct 351 GCACCGTGATGCCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCGT 292 Query 39079 CGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACG 39138 ||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||| Sbjct 291 CGCCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACG 232 Query 39139 CCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAG 39198 | || | ||||| || || ||||| ||||| ||||||||||||||||| |||||| | | Sbjct 231 CGGTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCCG 172 Query 39199 CGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGC 39258 ||| || | ||| | |||||||| |||| ||| || | || |||||||| || || Sbjct 171 AGAACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCCA 112 Query 39259 GCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCA 39318 | |||| || || | | ||| |||| |||| || | |||||||||||||| Sbjct 111 CCATGCCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCCA 52 Query 39319 TCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGC 39361 | || ||||| || | ||| ||||| || || | ||| || || Sbjct 51 TGGCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163314369465804