Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq2959 107 2e-18 >seq2959 Length=2134 Score = 107 bits (118), Expect = 2e-18 Identities = 188/273 (69%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCAT 105091 |||| |||| |||||| || ||||| |||| || ||| ||| | |||||| |||| Sbjct 1099 CTTCCCCGGCTACTTCCTGGTGGTCGCGGACTTCATCAACTGGTCCAAGGACAACGGCAT 1040 Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151 | ||| ||||||||||||||||| | | || || | || ||||| ||| ||| Sbjct 1039 CCGCGTGGGTCCCGGCCGTGGTTCCGGTGCCGGTTCCATGGTGGCGTACGCCATGCGCAT 980 Query 105152 CACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCG 105211 ||||||||| ||||| || | ||| ||||| |||||||| ||| || ||||| || Sbjct 979 CACCGAGCTGAACCCGCTCGCGCACGGGCTGATCTTCGAGCGCTTCCTCAACCCGGACCG 920 Query 105212 GAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCGA 105271 | | | |||||| |||| | |||||| | || ||| |||||| || | Sbjct 919 CGTGTCCATGCCCGACTTCGACGTGGACTTCGACGACCGCCGCCGCTCCGAGGTGATCCA 860 Query 105272 CTACATCGCCGACCGCTACGGCCACGACTGCGT 105304 |||| || | || |||||| |||| |||| Sbjct 859 CTACGTCACGGAGAAGTACGGCGACGAGCGCGT 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456042940452240