Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq4782 100 4e-16 >seq4782 Length=1171 Score = 100 bits (110), Expect = 4e-16 Identities = 186/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 98922 GAAGTCTTTGCGAAAGGTACGCCGAAGAAAGACCGTACCGGTACAGGCACGCTTTCTATC 98981 || ||| | | ||| || ||||| |||| ||||| ||||| || || ||||| || | Sbjct 666 GACGTCCTGGAGAACGGGACGCCCAAGACGGACCGCACCGGGACCGGGACGCTGTCGGTG 607 Query 98982 TTCGGCCACCAGATGCGTTTCAACTTGCAAGAAGGT--TTCCCGCTGGTAACGACCAAGC 99039 ||||| | |||||| || | | || | || | ||||| ||| | || ||||||| Sbjct 606 TTCGGGCGCCAGATCCGCTACGACCTC--AGCTCCTCCTTCCCCCTGCTGACCACCAAGC 549 Query 99040 GTTGCCACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATA 99099 || ||| | ||||| | | || |||||||||||||| ||| | |||| Sbjct 548 GTGTGCACTTCCGCTCCGTGGCGCTCGAGCTGCTGTGGTTCCTCTCCGGCTCCTCCAACG 489 Query 99100 TCCAGTACCTGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCG 99159 | | | ||| | || || || | ||| |||||||| ||||||||| | || || | Sbjct 488 TGCGCTGGCTGCAGGAGCGCGGGGTGAGCATCTGGGACGAGTGGGCGGACGAGAACGGGG 429 Query 99160 ACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||| |||||||| ||||| ||||||||| Sbjct 428 ACCTGGGTCCGGTGTACGGCGTGCAGTGGCG 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716588624091120