Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq939 138 6e-28 seq747 120 2e-22 >seq939 Length=10641 Score = 138 bits (152), Expect = 6e-28 Identities = 212/300 (71%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 60959 TCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAG--GCCGTCGC 61016 |||| | |||||||| |||||||| || || ||||| | || | || ||||| || Sbjct 9499 TCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC--GTCCGGAGCCGCCGTGGC 9442 Query 61017 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 61073 |||||||||||| | ||||| | ||| | |||| ||| ||||| ||| || Sbjct 9441 CAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAGAGCAACGAGTGGAAAGA 9382 Query 61074 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 61133 | || | ||| | |||||| | | ||||| || || ||||||||||| ||||| Sbjct 9381 CCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCGGCCGAGAACGTGGCGGA 9322 Query 61134 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 61193 |||| || ||| ||||| ||||| || ||| ||||||| ||||| | ||| Sbjct 9321 GTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTCAAGGCACGCTCGTACGA 9262 Query 61194 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 61253 |||||||||||| || |||||| || |||| |||| || |||||||||||||| || Sbjct 9261 GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTGGACGAGATCGGCCCCTC 9202 >seq747 Length=14078 Score = 120 bits (132), Expect = 2e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 7409 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 7468 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 67744 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 7469 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 7528 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 7529 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 7588 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 7589 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 7648 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 7649 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 7708 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 7709 ATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 7768 Query 67985 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 7769 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 7828 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 7829 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 7885 Query 68105 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 68161 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 7886 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 7942 Query 68162 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 68209 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 7943 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 7990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247433381070624