Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq747 147 1e-30 seq939 138 5e-28 >seq747 Length=14078 Score = 147 bits (162), Expect = 1e-30 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 64830 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 64889 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7505 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7564 Query 64890 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 64949 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7565 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7624 Query 64950 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65009 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 7625 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7684 Query 65010 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65069 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7685 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTA 7744 Query 65070 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 65126 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7745 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7802 Query 65127 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 65186 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 7803 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7858 Query 65187 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65246 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7859 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7918 Query 65247 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 65306 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 7919 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7978 Query 65307 AACAAGCTGGCCCCGCC 65323 ||||||||||| |||| Sbjct 7979 AACAAGCTGGCGTCGCC 7995 >seq939 Length=10641 Score = 138 bits (152), Expect = 5e-28 Identities = 212/300 (71%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 58927 TCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAG--GCCGTCGC 58984 |||| | |||||||| |||||||| || || ||||| | || | || ||||| || Sbjct 9499 TCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC--GTCCGGAGCCGCCGTGGC 9442 Query 58985 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 59041 |||||||||||| | ||||| | ||| | |||| ||| ||||| ||| || Sbjct 9441 CAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAGAGCAACGAGTGGAAAGA 9382 Query 59042 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 59101 | || | ||| | |||||| | | ||||| || || ||||||||||||||||| Sbjct 9381 CCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCGGCCGAGAACGTGGCGGA 9322 Query 59102 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59161 |||| || ||| ||||| ||||| || ||| ||||||| ||||| | ||| Sbjct 9321 GTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTCAAGGCACGCTCGTACGA 9262 Query 59162 GACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59221 ||||||||| || || |||||| || |||| |||| || |||||||||||||| || Sbjct 9261 GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTGGACGAGATCGGCCCCTC 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237331643226118