Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2703 89.7 2e-12 >seq2703 Length=2396 Score = 89.7 bits (98), Expect = 2e-12 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || ||||| || ||||| ||||||||||| || || | | || | ||||| || Sbjct 1777 ACGGAAGCCGGGTATGTCGGTGAAGATGTCGAGAATATTCTCCTCAAGCTCATCCAGGCC 1718 Query 188929 GCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAA 188988 ||||||| |||| || | |||||| | || ||| | || || || || | || || Sbjct 1717 GCTGATTTCGATCTCAAGAAAGCGGAGCAGGGGATTATTTACATTGACGAGATCGACAAG 1658 Query 188989 ATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAG 189048 ||| || | ||||| || | | | || || || || || ||||| |||||||| || ||| Sbjct 1657 ATTTCTCGTAAATCGGAGAACCCCTCGATCACGCGTGACGTATCGGGCGAAGGGGTCCAG 1598 Query 189049 CAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGT 189108 || || | | || ||| | || || || || || || || || || || || || Sbjct 1597 CAGGCGCTCCTGAAGATCTTGGAGGGCACCGTGGCCTCGGTGCCCCCGCAGGGCGGGCGC 1538 Query 189109 AAACACCCTCACCAAGA 189125 || ||||| || || || Sbjct 1537 AAGCACCCCCAGCAGGA 1521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591800708418944