Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq50 93.3 1e-13 >seq50 Length=70362 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 19835 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 19776 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 19775 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 19716 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 19715 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 19656 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | || || | ||||| Sbjct 19655 ACACTGCACTTGGTGCTGCGTCTTCG 19630 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 20063 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 20004 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 20003 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 19944 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 19943 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 19884 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 19883 ACGCTGCAC 19875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181739365899138