Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_026606.1 Length=71200 Score E Sequences producing significant alignments: (Bits) Value seq939 257 8e-64 >seq939 Length=10641 Score = 257 bits (284), Expect = 8e-64 Identities = 282/370 (76%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 62724 ACATGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTAC 62783 ||||||| || || ||| ||| || ||||| || |||||||| || |||||| | | Sbjct 9529 ACATGGCTGGCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTC 9470 Query 62784 GGTTCACGCCGTCCGGCAGCC-CGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACG 62842 | |||||||||||||| |||| | ||||||||||||||| |||| |||||||||| | Sbjct 9469 GCTTCACGCCGTCCGG-AGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCC 9411 Query 62843 TTCGACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGC-GCGAGTAT 62901 |||||||||||||||||||||||||| ||| |||||| || || ||||| || | | Sbjct 9410 TTCGACCGGCAGAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGG-T 9352 Query 62902 CTGGCGCGACCCCGCGGAGAACGTGGCAGAGTCCCTGACCAAGGGCATGCGCGTGATTGT 62961 ||||| || | || ||||||||||| |||||||| |||||||||| |||||||| || Sbjct 9351 GTGGCGTGAGGCGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGT 9292 Query 62962 GTCCGGGCGGCTCAAGTCCCGCAGCTACGAGACCAAGGAAGGCGAAAAGCGCACGGTCAT 63021 || || |||||| | ||| ||||||||||||||||| || ||||| || Sbjct 9291 CCAGGGCCGCCTCAAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCAC 9232 Query 63022 TGAGCTTGAGGTGGACGAAATTGGCCCGTCTTTGCGCTATGCCAACGCCAAGGTGAACCG 63081 ||||| || |||||||| || ||||| || || || || | ||||||| | ||||| Sbjct 9231 CGAGCTGGAAGTGGACGAGATCGGCCCCTCCATGAAGTACGCGACCGCCAAGATCAACCG 9172 Query 63082 GACCCAGCGC 63091 || | |||| Sbjct 9171 GAACTCGCGC 9162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227700274549538