Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq4782 102 4e-17 >seq4782 Length=1171 Score = 102 bits (112), Expect = 4e-17 Identities = 116/153 (76%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 21674 GCCCTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAAC 21733 |||||||||||| | ||||| |||||| || ||| |||||||||||||||| |||||| Sbjct 152 GCCCTGAGCTGCCAGCTCTACCAGCGCTCGGCGGACCTGTTCCTGGGCGTGCCGTTCAAC 93 Query 21734 ATCGCCAGCTACGCGCTGCTGACGCACCTCATGGCGGCC--ACGGT-CGGCATGCAGGCC 21790 |||||| |||||||||||| || | | ||| |||| | || || | || | || Sbjct 92 ATCGCCTCCTACGCGCTGCTCAC---CGTGATGTTGGCCCAGCAGTGCGACCTGGTGCCC 36 Query 21791 GAGAAGTTCATCTGGTCTGGCGGTGACTGCCAC 21823 | ||||| | ||| | ||||| ||||||||| Sbjct 35 GGCGAGTTCGTGTGGACCGGCGGGGACTGCCAC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236282112021494