Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq2959 673 0.0 seq5028 307 3e-79 >seq2959 Length=2134 Score = 673 bits (746), Expect = 0.0 Identities = 1194/1720 (69%), Gaps = 52/1720 (3%) Strand=Plus/Plus Query 39307 CACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTC 39366 ||||||||||||||| | ||| || ||||| || | | ||||||||||| || ||||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 39367 CTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTT 39426 | | | ||||||||| || || | |||| ||||| || ||||| || || || ||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 39427 CGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTC 39486 ||||| ||| ||||||| |||||||| ||||| || |||| | || |||||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 39487 CTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTG 39546 |||||||||||| || || || |||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 39547 GAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGG 39606 |||||| || ||||| || ||||||||||||||||| || |||||| | || Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 39607 GATGTTCTCCAGGTCGA---CGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTC 39663 | || ||||||||| | || | | ||||| | ||||||||| | ||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTTCAGCGTGATGTTCTCCAGCGCGTC 378 Query 39664 GCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTC 39723 | |||||||||||||| ||||| || |||||||||||||||| | |||| || ||| Sbjct 379 GGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCTC 438 Query 39724 GCACTGGGGGTAGTCCCACTGCGTGACGG--TGACGCCGTCC-GCAGGACGGACCCACAC 39780 |||| ||||||||| |||| |||| |||| ||||| || | ||| | | Sbjct 439 GCACGTGGGGTAGTCGAACTGGGTGATCACCTGAC--CGTCCTGCTCG-CGGCGCATGAG 495 Query 39781 CGGAAGGTGATCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCAT 39840 ||| | | |||| ||| || || |||||||||||| || || |||||||| ||| Sbjct 496 CGGGATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCCA 555 Query 39841 CTGGCGAACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTC 39900 |||||| || || || || || | || || |||| |||| | | || || ||| Sbjct 556 CTGGCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGTC 615 Query 39901 GTTCTCGTACAGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAA 39960 || |||| || | || | ||| || ||||||||||||||| | ||| || | | Sbjct 616 GTCCTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGTA 675 Query 39961 GATCCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTT 40020 || ||| ||||| || | |||||| || || | ||| |||||||| ||| Sbjct 676 GACGTCCTGCAGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGCCG 735 Query 40021 CTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGC 40080 ||| || | ||| || | | | |||||||| | | |||||| | ||| | || Sbjct 736 CTCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTGGC 795 Query 40081 CTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGAC 40140 |||||| |||| | || ||||| || || ||| | ||||||||||| ||||| Sbjct 796 CTTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTCGCCGTACTTCTCCGTGAC 855 Query 40141 GTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGA 40200 ||| |||| |||||| ||| || ||||| |||||||| | ||| | |||||||||||| Sbjct 856 GTAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATGGA 915 Query 40201 CACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTC 40260 |||||| || ||||| ||||| ||||||||||| ||||||||| | || || | || || Sbjct 916 CACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGCTC 975 Query 40261 GGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320 |||||| | | | ||| || |||| |||||||| | || || || || ||||| || Sbjct 976 GGTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCCAC 1035 Query 40321 CCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGG 40380 | | |||||| ||||||| |||| ||||||||| ||||| |||||||||||| || Sbjct 1036 GCGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCGGG 1095 Query 40381 GAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTC 40440 |||||||||||||||||| || | ||||||||| | ||||| | | |||| Sbjct 1096 GAAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCTCACGGACGTCGTCCGG 1155 Query 40441 GGTCCCGTTCGGGAA-CCGTCGAGCTGCCCCACGGTGGACCTCGTCCTCGAACC---AGG 40496 | ||||| |||||| | || | || ||||| | |||||| | ||||| ||| Sbjct 1156 GATCCCGCCCGGGAAGCGGTAGTGCAGCCCC-TTCTCGACCTCCTTGATGAACCACGAGG 1214 Query 40497 TCACCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGCATG-AG--GTCGGTGTGCTCGA 40553 || | ||| | |||||||||| |||||||| |||||| || | ||| | |||| Sbjct 1215 TCTCGTCC---TCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGTTGGCGGAGGTGTCGA 1271 Query 40554 ACATGCCCGTCGTGTCGACA-CGCTCGGCGATCTCCAGCGTGGT-CCGCATCCCCC---- 40607 || | | | ||| || ||||||||||||||||| ||| | |||| || | Sbjct 1272 AC-TCCACCTCG------CAGCGCTCGGCGATCTCCAGGGTGTTGTCGCACGCCTCGGGG 1324 Query 40608 -ACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGTCTTGATGTAGTAC 40666 | |||| || | || ||| || ||||| ||| | ||||| |||| || Sbjct 1325 AAGTCCC----GGAACAG--CTCG-----CG-CATCTGCTCGGGGGACTTGAGGTAGAAC 1372 Query 40667 CCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCAG 40726 || | |||||| |||||| || |||| | ||||||| ||||| ||| ||||| Sbjct 1373 TCGTCCGCGTCGAACTTGAAGCGCTTGGGGTCCTGCAGCGTGGAGCCGGACTGCACGCAC 1432 Query 40727 AGTAGGGCATCGTGCGCCTTGCTCTCGTCGGCCGTGACGTAGTGGCTGTCGTTGGTGACC 40786 || || || |||| | |||| || ||||| | |||||| |||||||||| || Sbjct 1433 AGCAGCGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGGCC 1492 Query 40787 ACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGCGGACGCGCCGCTCG 40846 || | | || |||| |||| |||| || ||||| | | || ||| |||| Sbjct 1493 ACGAGCGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCTCG 1552 Query 40847 ATCTCCAGGCCGTGGTCCATGATCTC-CAG--GAAGTACCGGTCACGACCGAACACCTCC 40903 || |||| ||||||||||| | || ||| ||||| | || ||||| | ||| Sbjct 1553 ATGCCCAGCCCGTGGTCCATCAGTTCGCAGTAGAAGTTC---TCCGCCCCGAAGATGTCC 1609 Query 40904 AGGTACCGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCATG 40963 || || | || || || |||| ||||||||| || || ||||||||| Sbjct 1610 CGGAACTCCGCGGCGGCCTTGACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTCTGC 1669 Query 40964 ATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCT 41003 | | | ||| ||||||||||||||| |||| || |||| Sbjct 1670 ACCTCGCCGGACGGGCAGCCCGTGGTGGCGATGAGCCCCT 1709 >seq5028 Length=1094 Score = 307 bits (340), Expect = 3e-79 Identities = 426/586 (73%), Gaps = 19/586 (3%) Strand=Plus/Minus Query 38710 GTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCGCGCTTGCT---CACGGTGGCCTG 38766 |||||||||||||||||||| || ||||||||||| |||||| | ||| ||| | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTTGCACACCACCGCCGG 522 Query 38767 AGTCGCTGCCTTCAAGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGTTC 38826 | | ||| | |||||| | ||| |||||||||||| ||| || | | Sbjct 521 AACCTTGGCC---AGGAAGTCGTTGAAGGACGTGAACTTCCCCT--GCTCGTTGCGGG-C 468 Query 38827 GGCGATCTCGGC---GACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCG 38883 | | | | ||| ||||| | |||||||||| ||| ||| || |||||||| Sbjct 467 GTCCACCATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCG 408 Query 38884 GATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGAC-CGA-CACGTCGGGCGGC 38941 ||| ||| | || | ||||||||| | | ||| ||| || |||||| |||||| Sbjct 407 GATGTCGGTGCCCACA---GGGGTGAAGTT-CAGCTCG-GACTCGTTCACGTCCGGCGGC 353 Query 38942 AGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCG 39001 || ||| | ||||||| | || |||| ||||||| |||||| ||||| ||||||| Sbjct 352 AGCACCGTGATGCCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCG 293 Query 39002 TCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTAC 39061 ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| Sbjct 292 TCGCCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTAC 233 Query 39062 GCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCG 39121 || || | ||| | || |||||||| ||||| ||||||||||||||||| ||||| | Sbjct 232 GCGGTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCC 173 Query 39122 GCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTCG 39181 | ||| || | || | |||||||| ||||| ||| ||| || |||||||| || || Sbjct 172 GAGAACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCC 113 Query 39182 CGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCC 39241 | |||| || || | | ||| |||| |||| || | ||||||||||||| Sbjct 112 ACCATGCCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCC 53 Query 39242 ATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGA 39287 ||||| || || || | ||| |||||||| || |||||| |||| Sbjct 52 ATGGCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGCGA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160396155845772