Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq2959 827 0.0 seq5028 325 1e-84 >seq2959 Length=2134 Score = 827 bits (916), Expect = 0.0 Identities = 1487/2141 (69%), Gaps = 70/2141 (3%) Strand=Plus/Plus Query 38214 CACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTC 38273 ||||||||||||||| | ||| || ||| |||| | | |||||||||| | |||||||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 38274 CTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTT 38333 | | | |||||||||||| || |||||||||||| ||||||||||| || |||||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 38334 CGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTC 38393 ||||| ||| | |||||| |||||||| ||||| || |||| | || |||||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 38394 CTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTG 38453 |||||| | |||||| || || ||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 38454 GAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGG 38513 ||| || |||||||| || | ||||||||||||||||| | |||||||| | || Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 38514 GATGTTCTCGATGTCGA---CGTGCTCACCACGGTTGCGGCG-GATGTTCTCGACCGCGT 38569 | || ||| | ||| | || | | ||||| | ||| ||||||||| | ||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTT-CAGCGTGATGTTCTCCAGCGCGT 377 Query 38570 CGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCT 38629 || |||||||||||||| || ||||| |||||||||||||| | ||| |||||| ||| Sbjct 378 CGGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCT 437 Query 38630 CGCAGCTCGGGTAGTCGAACTGCGTGATCGTCACGCCGTCC-GCAGGCCGCACCCACGTA 38688 |||| | |||||||||||||| |||||| | |||||| || || || | | Sbjct 438 CGCACGTGGGGTAGTCGAACTGGGTGATCACCTGACCGTCCTGCTCGCGGCGCATGAGC- 496 Query 38689 GGGATGTGGTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATC 38748 |||||| ||||| |||||| || ||||||||||| || || |||||||| ||| | Sbjct 497 GGGATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCCAC 556 Query 38749 TGCCGGACGAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCG 38808 || || ||| || || ||||| | || |||| ||||| | | | || |||| Sbjct 557 TGGCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGTCG 616 Query 38809 TTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTG 38868 | |||| || | | || | ||| || ||||||||||||||| | ||| || | | Sbjct 617 TCCTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGTAG 676 Query 38869 ATGCCCTCCAGGGGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTC 38928 | | ||| ||||| || | |||||| ||||| | ||| |||||||| ||| | Sbjct 677 ACGTCCTGCAGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGCCGC 736 Query 38929 TCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCC 38988 || || | ||| || | | | |||||||| | | |||||| | ||| | ||| Sbjct 737 TCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTGGCC 796 Query 38989 TTGATCCGTCCGTACGTCGCGATCTGTGCGAC---CTTGTCACTGCCGTACTTCTCGGTG 39045 ||||| |||||||| ||||| || || || ||| |||||||||||| ||| Sbjct 797 TTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTC---GCCGTACTTCTCCGTG 853 Query 39046 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39105 ||||| ||||||| ||| ||||| ||||| |||||||| | ||| | |||||||||| Sbjct 854 ACGTAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATG 913 Query 39106 GAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39165 || || || || ||||| ||||| ||||||||||| |||||||| | || |||| ||| Sbjct 914 GACACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGC 973 Query 39166 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCG 39225 |||||||| | | ||||||||| ||| || || || | || || || || || || Sbjct 974 TCGGTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCC 1033 Query 39226 ACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGAC 39285 || | | |||||| ||||| | |||| ||||||||| ||||| || |||||||| Sbjct 1034 ACGCGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCG 1093 Query 39286 GGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTGCGGTGCTCGTCG 39345 ||||| ||||||||| |||| || | ||||||||||| ||||| ||| ||||| Sbjct 1094 GGGAAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCTCACGGACGTCGTCC 1153 Query 39346 TCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGCACCTGCTCGCGGAAGAACTGG 39405 | ||| || ||||||||| || || || | |||| || | ||| || | Sbjct 1154 GGGATCCCGCCCGGGAAGCGGTAGTGCAGCCCCTTCTCGACCTCCTTGATGAACCACGAG 1213 Query 39406 CCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAACTCGAACATG 39465 ||| || ||||||||| |||||||| |||||| || ||| || | || Sbjct 1214 GTCTCGTCCTCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGT--TGG----CGGAGGTG 1267 Query 39466 CCGGTCGTGTCGACC------CGGTCGGCGATCTCCAGCGTGGTCCGCATCCCCCACTCC 39519 || | || ||| || |||||||||||||| ||| | | ||| || Sbjct 1268 TCGAAC---TCCACCTCGCAGCGCTCGGCGATCTCCAGGGTG------TTGTCGCACGCC 1318 Query 39520 CAGATGGGAGAGGAGTCG--ATGGCT-GC-CATCTCGGCGGCCGACTTCAGGTAGTACCC 39575 | || || | || | ||| || ||||| ||| ||||| |||||| || | Sbjct 1319 ----TCGGGGAAGTCCCGGAACAGCTCGCGCATCTGCTCGGGGGACTTGAGGTAGAACTC 1374 Query 39576 CTCGCCCTCGAACCGGAACCGAT---CCTCCTGGTAGAGGGTCGAGCCGGTCTGGACGCA 39632 || | |||||| ||| || | ||||| || || ||||||| ||| ||||| Sbjct 1375 GTCCGCGTCGAACTTGAAGCGCTTGGGGTCCTG---CAGCGTGGAGCCGGACTGCACGCA 1431 Query 39633 CAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGAC 39692 |||||| || |||||| | || |||||| | | ||||||||| |||||||||| | Sbjct 1432 CAGCAGCGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGGC 1491 Query 39693 CACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTC 39752 ||| | | || | ||| || | ||||| ||||| | | || ||| ||| Sbjct 1492 CACGAGCGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCTC 1551 Query 39753 GATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCG 39812 ||| |||| ||||||||||| | || | ||||||| ||| ||||||||| ||||| Sbjct 1552 GATGCCCAGCCCGTGGTCCATCAGTTCGCAGTAGAAGTTCTCCGCCCCGAAGATGTCCCG 1611 Query 39813 CCACTTCGCGGCCTCGGCGACGGCCTCCTCGTACTGGCCGAGGTTGAGCCGGGTCATCAC 39872 ||| |||||| | ||| ||||| ||||||||||| || ||||||||| ||| Sbjct 1612 GAACTCCGCGGCGGCCTTGACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTCTGCAC 1671 Query 39873 TGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCCGCCACCAGCTC 39932 |||| ||||| ||||||||| |||| || |||| ||| || || |||||| Sbjct 1672 CTCGCCGGACGGGCAGCCCGTGGTGGCGATGAGCCCCTTGCCGTACTGGTTCAGCAGCTC 1731 Query 39933 GGCGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCGCTGTACGAGCGAGAGGA-GAGCT 39991 ||||||||| || ||| ||| ||||||| | ||| | ||| | || Sbjct 1732 CCGGTCCATGCGGGG---CTTGTACAGCTGGCCCTCCAGGGACGCCTTGGTGGACGCGC- 1787 Query 39992 TGAACAGGTTGTGCAGGCCGGTCTTGTTCG--TG-GCGAGCATGGTCATGTGGGTGTAGG 40048 ||||||||| |||| ||| || | | | || || |||| ||||||||| ||||||| Sbjct 1788 GGAACAGGTTCTGCATGCC---CTCGCTGGACTGCGCCAGCAGGGTCATGTGCGTGTAGG 1844 Query 40049 CACCCCGACCGCTCACGTCGTACCGCTTCTGC--TCGGGCGTGCCCCAC-TGGACCCGCT 40105 | || |||| ||||||| ||| | || || ||| | ||| || || | Sbjct 1845 CGCCGGCACCGGATACGTCGT--CGCGGCCGCCGTC-CGCGAACTTCACGCGGGTGCGGT 1901 Query 40106 CCTGGTCGGAACGGTGCCCCGGTGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCC 40165 ||||| ||| ||||| ||||| | || ||| ||||| | |||||||| ||||||| | Sbjct 1902 CCTGG-CGG-GCGGTG-CCCGGCGTGAGGTAGGCCTCCACGCCGATGATCGGCTTGATGC 1958 Query 40166 CAGCGGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCATGCAGGTTGCCGTGGTCGGTCA 40225 | || || || ||| | |||||||| |||| || || | |||||||| || Sbjct 1959 CGGCCGCGCGCGCCTTGTTCCAGAAGTCGAACGCCCCGAACACGAACCCGTGGTCCGTGG 2018 Query 40226 TCGCGAGGGCTCTCATGCCCTGCGCCTTGGC-CTCGGCGAACATGTCCTTCAGCCGAGCC 40284 | || || | ||||||| || | |||| ||| |||| | ||| ||||| || || Sbjct 2019 TGGCCAGCGAGTCCATGCCCAGC-CGGTGGCACTCCTCGAAGAGGTCGTTCAGGCGCGCG 2077 Query 40285 GCCCCGTCGAGCAGGCTGTACTCGGAGTGGACATGCAGGTG 40325 || ||||| |||| | |||||||| ||| || || || || Sbjct 2078 GCACCGTCCAGCATGGAGTACTCGGTGTGCACGTGGAGATG 2118 >seq5028 Length=1094 Score = 325 bits (360), Expect = 1e-84 Identities = 426/581 (73%), Gaps = 13/581 (2%) Strand=Plus/Minus Query 37617 GTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCTTGCT---CACGTTCGCCTG 37673 |||||||||||||||||||| || |||||||| || |||||| | ||| |||| | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTTGCACACCACCGCCGG 522 Query 37674 AGTCGCCGACCGAAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGTTG 37733 | | | | |||||||| | ||| |||||||||||| | | || | Sbjct 521 AACCTTGGCC---AGGAAGTCGTTGAAGGACGTGAACTTCCCCTGCTCGTTGCGGGCGTC 465 Query 37734 GACGATCTCATCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGAT 37793 || || | | ||||| | |||||||||| ||| ||| || ||||||||||| Sbjct 464 CACCATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCGGAT 405 Query 37794 CTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGAC-CGA-CACGTCGGGCGGCAGG 37851 || | | ||| ||||||||| || ||| ||| || |||||| |||||||| Sbjct 404 GTC--GGTGCCCACA-GGGGTGAAGTTC-AGCTCG-GACTCGTTCACGTCCGGCGGCAGC 350 Query 37852 ACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCG 37911 ||| | ||||||| | | ||||||| ||||||| |||||| ||||| |||||||||| Sbjct 349 ACCGTGATGCCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCGTCG 290 Query 37912 CCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCC 37971 |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| Sbjct 289 CCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGCG 230 Query 37972 GTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCG 38031 || | ||| | || || ||||| ||||| ||||||||||||||||| ||||| | | | Sbjct 229 GTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCCGAG 170 Query 38032 AAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTC 38091 || || | || | |||||||| |||| ||| || ||||| |||||||| || || | Sbjct 169 AACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCCACC 110 Query 38092 GCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATG 38151 |||| || || | | ||| |||| ||||| || | |||||||||||||||| Sbjct 109 ATGCCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCCATG 50 Query 38152 GCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGC 38192 || || ||||||| ||| ||||| ||||| | ||| || || Sbjct 49 GCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159704999988396