Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq2959 821 0.0 seq5028 324 4e-84 >seq2959 Length=2134 Score = 821 bits (910), Expect = 0.0 Identities = 1486/2144 (69%), Gaps = 53/2144 (2%) Strand=Plus/Plus Query 38647 CACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTC 38706 ||||||||||||||| | ||| || ||| |||| | | |||||||||| | |||||||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 38707 CTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTT 38766 | | | |||||||||||| || |||||||||||| ||||||||||| || |||||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 38767 CGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTC 38826 ||||| ||| | |||||| |||||||| ||||| || || | | ||||||||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 38827 CTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTG 38886 |||||| | |||||| || || |||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 38887 GAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGG 38946 |||||| || ||||| || | ||||||||||||||| | ||||||| || | || Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 38947 GATGTTCTCGATGTCGA---CGTGCTCACCACGGTTGCGGCG-GATGTTCTCGACCGCGT 39002 | || ||| | ||| | || | | ||||| | ||| ||||||||| | ||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTT-CAGCGTGATGTTCTCCAGCGCGT 377 Query 39003 CGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCT 39062 || |||||||||||||| || ||||| |||||||||||||| | ||| ||||| ||| Sbjct 378 CGGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCT 437 Query 39063 CGCAGCTCGGGTAGTCGAACTGCGTGATCGTTACGCCGTCC-GCAGGCCGCACCCACGTC 39121 |||| | |||||||||||||| |||||| |||||| || || || | | | Sbjct 438 CGCACGTGGGGTAGTCGAACTGGGTGATCACCTGACCGTCCTGCTCGCGGCGCATGAG-C 496 Query 39122 GGGATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATC 39181 |||||| |||| |||||| || |||||||||||| || || |||||||| ||| | Sbjct 497 GGGATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCCAC 556 Query 39182 TGCCGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCG 39241 || || ||| || || ||||| | || || | ||||| | | | || |||| Sbjct 557 TGGCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGTCG 616 Query 39242 TTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTG 39301 | |||| || | | || | ||| || ||||||||||||||| | ||| || | | Sbjct 617 TCCTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGTAG 676 Query 39302 ATGCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTC 39361 | | ||| ||||| || | |||||| || || | ||| |||||||| ||| | Sbjct 677 ACGTCCTGCAGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGCCGC 736 Query 39362 TCGCCGACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCC 39421 || || | || || | | | |||||||| | | |||||| | ||| | |||| Sbjct 737 TCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTGGCC 796 Query 39422 TTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACG 39481 ||||| |||||||||| ||||| || || ||| |||||||||||| |||||| Sbjct 797 TTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTCGCCGTACTTCTCCGTGACG 856 Query 39482 TACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAG 39541 || ||||||| ||| ||||| ||||| |||||||| | ||| | |||||||||||| Sbjct 857 TAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATGGAC 916 Query 39542 ACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCG 39601 ||||| || ||||| ||||| ||||||||||| |||||||| | || |||| ||| ||| Sbjct 917 ACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGCTCG 976 Query 39602 GTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACC 39661 ||||| | | ||||||||| ||| || || || | || ||||| || || || || Sbjct 977 GTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCCACG 1036 Query 39662 CACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGG 39721 | | ||||| ||||| | |||| ||||||||| ||||| || |||||||| ||| Sbjct 1037 CGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCGGGG 1096 Query 39722 AACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCGGTGCTCGTCGTCG 39781 || ||||||||| |||| || | ||||||| ||| ||||| ||| ||||| | Sbjct 1097 AAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCTCACGGACGTCGTCCGGG 1156 Query 39782 TACCCCTGCGGGAAGCGACGGTCCATGCCGATGAGCACCTGCTCGCGGAAGAACTGGCCC 39841 ||| ||||||||| || || || | |||| || | ||| || | | Sbjct 1157 ATCCCGCCCGGGAAGCGGTAGTGCAGCCCCTTCTCGACCTCCTTGATGAACCACGAGGTC 1216 Query 39842 TCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAACTCGAACATGCCG 39901 || || || |||||| |||||||| |||||| || ||| || | || || Sbjct 1217 TCGTCCTCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGT--TGG----CGGAGGTGTCG 1270 Query 39902 GTCGTGTCGACC------CGGTCAGCGATCTCCAGCGTGGTG-CGCATCCCCCACGACCA 39954 | || ||| || || ||||||||||| ||| || |||| | || || | Sbjct 1271 AAC---TCCACCTCGCAGCGCTCGGCGATCTCCAGGGTGTTGTCGCA--CGCCTCGGGGA 1325 Query 39955 GATGTCGGAGCTGTCGATGGCTGCCATCTCGGCGGCCGACTTCAGGTAGTACCCTTCGCC 40014 | |||| | | | || ||||| ||| ||||| |||||| || | || | Sbjct 1326 AGTCCCGGAAC---AGCTCGC--GCATCTGCTCGGGGGACTTGAGGTAGAACTCGTCCGC 1380 Query 40015 CTCGAACCGGAAGCGAT---CCTCCTGGTAGAGGGACGAGCCGGTCTGGACGCACAGCAG 40071 |||||| |||||| | ||||| || | ||||||| ||| ||||||||||| Sbjct 1381 GTCGAACTTGAAGCGCTTGGGGTCCTG---CAGCGTGGAGCCGGACTGCACGCACAGCAG 1437 Query 40072 GGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGACCACCGG 40131 || |||||| | || |||||| | | ||||||||| |||||||||| |||| | Sbjct 1438 CGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGGCCACGAG 1497 Query 40132 GGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTC 40191 | || | ||| || | ||||| ||||| | | || ||| |||||| | Sbjct 1498 CGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCTCGATGCC 1557 Query 40192 CAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACTT 40251 ||| ||||||||||| | || | ||||||| ||| ||||||||| ||||| ||| Sbjct 1558 CAGCCCGTGGTCCATCAGTTCGCAGTAGAAGTTCTCCGCCCCGAAGATGTCCCGGAACTC 1617 Query 40252 CGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCCGGGTCATCACAGCACC 40311 ||| || | ||| ||||| |||||||| || || ||||||||| ||| | || Sbjct 1618 CGCGGCGGCCTTGACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTCTGCACCTCGCC 1677 Query 40312 ACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCGGCCACCAGCTCGGCGTC 40371 ||||| ||||||||| |||| || |||| ||| || | || |||||| ||| Sbjct 1678 GGACGGGCAGCCCGTGGTGGCGATGAGCCCCTTGCCGTACTGGTTCAGCAGCTCCCGGTC 1737 Query 40372 CATGCGCGGGTACTTCCCGAGCAGACCCTCGCTGTACGAGCGAGAGGA-GAGCTTGAACA 40430 |||||| || ||| ||| | ||||| | ||| | ||| | || ||||| Sbjct 1738 CATGCGGGG---CTTGTACAGCTGGCCCTCCAGGGACGCCTTGGTGGACGCGC-GGAACA 1793 Query 40431 GGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGCACCCCGAC 40490 |||| |||| ||| || | ||| |||| ||||||||| |||||||| || || Sbjct 1794 GGTTCTGCATGCCCTCGCTGGACTGCGCCAGCAGGGTCATGTGCGTGTAGGCGCCGGCAC 1853 Query 40491 CGCTCACGTCGTACCGCTTCTGC--TCGGGCGTGCCCCAC-TGGACCCGCTCCTGGTCGG 40547 || ||||||| ||| | || || ||| | ||| || || |||||| ||| Sbjct 1854 CGGATACGTCGT--CGCGGCCGCCGTC-CGCGAACTTCACGCGGGTGCGGTCCTGG-CGG 1909 Query 40548 AGCGCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAGCGGCCT 40607 ||| | |||||||| || ||| ||||| | |||||||| ||||||| || || || Sbjct 1910 -GCG-GTGCCCGGCGTGAGGTAGGCCTCCACGCCGATGATCGGCTTGATGCCGGCCGCGC 1967 Query 40608 GCCCCTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTCGGTCATCGCGAGGG 40667 || ||| | |||||||| |||| ||| || | |||||||| || | || || | Sbjct 1968 GCGCCTTGTTCCAGAAGTCGAACGCCCCGAACACGAACCCGTGGTCCGTGGTGGCCAGCG 2027 Query 40668 CCTTCATGCCCTGCGCCTTGGC-CTCGGCGAACATGTCCTTCAGTCGAGCCGCCCCGTCG 40726 | ||||||| || | |||| ||| |||| | ||| ||||| || || || ||||| Sbjct 2028 AGTCCATGCCCAGC-CGGTGGCACTCCTCGAAGAGGTCGTTCAGGCGCGCGGCACCGTCC 2086 Query 40727 AGAAGGCTGTACTCGGAGTGGACATGCAGGTGGACGAAGTCCTT 40770 || | | |||||||| ||| || || || ||| |||| |||| Sbjct 2087 AGCATGGAGTACTCGGTGTGCACGTGGAGATGGGTGAAG-CCTT 2129 >seq5028 Length=1094 Score = 324 bits (358), Expect = 4e-84 Identities = 428/583 (73%), Gaps = 17/583 (3%) Strand=Plus/Minus Query 38050 GTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCTTGCT---CACGTTCGCCTG 38106 |||||||||||||||||||| || |||||||| || |||||| | ||| |||| | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTTGCACACCACCGCCGG 522 Query 38107 AGTCGCCGACCGGAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGTTG 38166 | | | | |||||||| | ||| |||||||||||| | | || | Sbjct 521 AACCTTGGCC---AGGAAGTCGTTGAAGGACGTGAACTTCCCCTGCTCGTTGCGGGCGTC 465 Query 38167 GACGATCTCCTCGACCATGCTCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGAT 38226 || || ||| ||||| | | |||||||||| ||| ||| || ||||||||||| Sbjct 464 CACCATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCGGAT 405 Query 38227 CTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGAC-CGA-CACGTCGGGCGGCAGG 38284 || | | ||| ||||||||| || ||| ||| || |||||| |||||||| Sbjct 404 GTC--GGTGCCCACA-GGGGTGAAGTTC-AGCTCG-GACTCGTTCACGTCCGGCGGCAGC 350 Query 38285 ACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCG 38344 ||| | ||||||| | | ||||||| ||||||| |||||| ||||| |||||||||| Sbjct 349 ACCGTGATGCCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCGTCG 290 Query 38345 CCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCC 38404 |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| Sbjct 289 CCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGCG 230 Query 38405 GTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCG 38464 || | ||| | || || ||||| ||||| ||||||||||||||||| ||||| | | | Sbjct 229 GTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCCGAG 170 Query 38465 AAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTC--GC 38522 || || | || | |||||||| |||| ||| || || || |||||||| || || | Sbjct 169 AACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCCACC 110 Query 38523 TTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCA 38582 || |||| || || | | ||| |||| ||||| || | |||||||||||||| Sbjct 109 ATG--CCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCCA 52 Query 38583 TGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGC 38625 |||| || ||||| | ||| ||||| ||||| | ||| || || Sbjct 51 TGGCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160229766472700