Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq2959 89.7 5e-13 seq3143 84.2 2e-11 >seq2959 Length=2134 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 113101 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113160 || || |||||||| |||| | || || |||| | |||| |||| |||||||| | Sbjct 1032 GGTCCCGGCCGTGGTTCCGGTGCCGGTTCCATGGTGGCGTACGCCATGCGCATCACCGAG 973 Query 113161 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 113220 | ||||| || | ||| ||||| ||||||||||| |||||||||||||| | Sbjct 972 CTGAACCCGCTCGCGCACGGGCTGATCTTCGAGCGCTTCCTCAACCCGGACCGCGTGTCC 913 Query 113221 TTCCCCGACATCGACGTCGACTTC 113244 | |||||| ||||||| |||||| Sbjct 912 ATGCCCGACTTCGACGTGGACTTC 889 >seq3143 Length=1992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 90719 ACCACGGGGTGTAGTTCAGTGGA-AGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTC 90777 |||||||||||||| |||||| || |||| || ||||||| || || |||||||||| Sbjct 622 ACCACGGGGTGTAGCGCAGTGGCTAGCGCGCCTGCTTTGGGAGCAGGAGATCGCAGGTTC 681 Query 90778 GAATCCTGTCACCCCGAC 90795 || ||||||||||||||| Sbjct 682 GAGTCCTGTCACCCCGAC 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494027586762720