Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq747 145 4e-30 seq939 138 5e-28 >seq747 Length=14078 Score = 145 bits (160), Expect = 4e-30 Identities = 332/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Plus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| ||||||||| | | || | | ||||||||||| || ||||| || Sbjct 7504 TGCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGA 7563 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | | ||| || || ||||||||| | || || | || ||||| |||| || Sbjct 7564 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGA 7623 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66421 | ||| || ||||| | | || | |||| || | ||| ||||||||| || || Sbjct 7624 CACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGT 7683 Query 66422 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66481 |||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7684 GCCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATT 7743 Query 66482 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66538 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7744 AATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 7802 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66598 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| Sbjct 7803 --TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGT 7857 Query 66599 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66658 ||| |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7858 CACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAA 7917 Query 66659 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66718 | | ||||||||||| || |||||||||| || |||||||| | ||| Sbjct 7918 GACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAA 7977 Query 66719 GAACAAGCTGGCCCCGCC 66736 |||||||||||| |||| Sbjct 7978 GAACAAGCTGGCGTCGCC 7995 >seq939 Length=10641 Score = 138 bits (152), Expect = 5e-28 Identities = 212/300 (71%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 59481 TCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAG--GCCGTCGC 59538 |||| | |||||||| |||||||| || || ||||| | || | || ||||| || Sbjct 9499 TCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC--GTCCGGAGCCGCCGTGGC 9442 Query 59539 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 59595 |||||||||||| | ||||| | ||| | |||| ||| ||||| ||| || Sbjct 9441 CAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAGAGCAACGAGTGGAAAGA 9382 Query 59596 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59655 | || | ||| | |||||| | | ||||| || || ||||||||||| ||||| Sbjct 9381 CCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCGGCCGAGAACGTGGCGGA 9322 Query 59656 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59715 |||| || ||| ||||| ||||| || ||| ||||||| ||||| | ||| Sbjct 9321 GTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTCAAGGCACGCTCGTACGA 9262 Query 59716 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59775 |||||||||||| || |||||| || |||| |||| || |||||||||||||| || Sbjct 9261 GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTGGACGAGATCGGCCCCTC 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240944206427400