Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_030911.1 Length=45858 Score E Sequences producing significant alignments: (Bits) Value seq939 233 6e-57 >seq939 Length=10641 Score = 233 bits (258), Expect = 6e-57 Identities = 261/349 (75%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 36169 ACATGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAACTGC 36228 ||||||| ||||| ||| ||||||| || ||||| || ||||| || || || ||||| | Sbjct 9529 ACATGGCTGGCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTC 9470 Query 36229 GGTTCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGACAGT 36288 | ||||| |||||||| || || || || |||||||| || || || || ||||| | Sbjct 9469 GCTTCACGCCGTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCT 9410 Query 36289 TCGACCGGGACGCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAACCTGT 36348 |||||||| | ||||||||||| ||| || | || |||||||||||| ||| Sbjct 9409 TCGACCGGCAGAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGT 9350 Query 36349 GGCGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCATCGTGC 36408 ||||||| ||||| |||||||| |||| || || | ||||| || || || ||||| | Sbjct 9349 GGCGTGAGGCGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCC 9290 Query 36409 AGGGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCATCGTCG 36468 ||||||| || || || |||||| ||| || || | || |||| | || Sbjct 9289 AGGGCCGCCTCAAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCG 9230 Query 36469 AGCTGGAAGTGGACGAGATCGGTCCGTCCCTGAAGTACGCGACGGCGAA 36517 |||||||||||||||||||||| || ||| ||||||||||||| || || Sbjct 9229 AGCTGGAAGTGGACGAGATCGGCCCCTCCATGAAGTACGCGACCGCCAA 9181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146614636041520