Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq4991 773 0.0 seq939 253 1e-62 >seq4991 Length=1104 Score = 773 bits (856), Expect = 0.0 Identities = 746/952 (78%), Gaps = 22/952 (2%) Strand=Plus/Plus Query 78219 AGGCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACC---GTGTGGGATCGAC 78275 ||||||||||||||||| ||| |||||| | |||||| || ||||| || | Sbjct 126 AGGCCATCAACTGGAACCGCGTCCAGGACGAG---AAGGACACCGAGGTCTGGGACCGTC 182 Query 78276 TCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGG 78335 | ||| |||||||||| ||||||||||||| ||| ||||||||||| | | |||||| Sbjct 183 TGACCTCCAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACGTGCAGTCCTGGA 242 Query 78336 ACACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGC 78395 | ||||| || | || ||| |||| ||||| ||| || ||||| ||||| ||||||| Sbjct 243 AGACCCTCACCGCCGAGGAGCAGGACCTCACCATGAAGGTCTTCACGGGCCTGACCCTGC 302 Query 78396 TCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGC 78455 | ||||||||||||||||| || ||||| ||||||||||| | |||||||| |||| || Sbjct 303 TGGACACCATCCAGGGCACGGTGGGCGCGGTCTCGCTCATCCCGGACGCCAAGACCCTGC 362 Query 78456 ACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACA 78515 |||||||||||||| |||||||||||| ||||||||||| || ||||||||||||||| Sbjct 363 ACGAGGAGGCGGTGTACACCAACATCGCCTTCATGGAGTCCGTGCACGCCAAGTCCTACT 422 Query 78516 GCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGG 78575 |||||||||||| ||||| | |||| |||||||| |||||||||||||| ||||| Sbjct 423 CCTCGATCTTCTCCACGCTGTCCTCCATGAAGCAGATCGACGAGGCGTTCCGCTGGTCCA 482 Query 78576 AGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACG 78635 ||||||||||| |||||||||||||||| | ||||||||| ||||||| || |||| Sbjct 483 AGGAGAACGAGCACCTGCAGCGCAAGGCGGACATCGTCCTGCGCTACTACAAGGGTGACG 542 Query 78636 ACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCT 78695 |||| ||||| |||||||||| ||||| |||||| |||||| ||||||||||| | Sbjct 543 ACCCGCTGAAGAAGAAGGTGGCCTCCACGCTGCTGGAGTCCTTCCTGTTCTACTCGGGGT 602 Query 78696 TCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCC 78755 |||||||||| ||||||| || | |||||||||||| |||||||||||| |||||| Sbjct 603 TCTACCTGCCCATGTACTTCTCCTCGCACGCCAAGCTGACCAACACCGCGGACCTGATCC 662 Query 78756 GGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAG 78815 || |||| ||||| ||||| || || || || ||||||||||| |||||||||||| | Sbjct 663 GGCTGATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTACCAGAAGG 722 Query 78816 GCCTCGAGACCCAGGGG---CCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATC 78872 | || | |||| | || | ||| ||| ||||| ||||| ||||| | ||| | Sbjct 723 GTCT---GCTGCAGGAGACCCCCGAGCGCCAGCAGGAGCTGAAGGACTACACCTACGACC 779 Query 78873 TGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCG 78932 |||| |||||||||||||||||| | |||| ||||| ||||| ||| ||| | Sbjct 780 TGCTGGACGAGCTCTACGACAACGAGGTGGCCTACGCCGAGGCCCTCTACGACTCCGTGG 839 Query 78933 GACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACC 78992 | |||||||| ||||||||||| |||| |||||||| |||||||| |||| |||| Sbjct 840 GCTGGACCGAGGACGTCAAGAAGTTTCTGCACTACAACGCGAACAAGGCCCTGAACAACC 899 Query 78993 TCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAG---ACCCGGCCATCATGT 79049 | |||||||| || |||||||| | |||| | || | |||||| ||| | | Sbjct 900 TGGGCTACGAGGCGCTGTTCCC---GCGCGAGATGACGGACGTCTCCCCGGCGATCCTCT 956 Query 79050 CCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCT 79109 || |||| || || || |||||||||||||||||||||||||| || ||||| || Sbjct 957 CCTCGCTGTCCCCGAACGCGGACGAGAACCACGACTTCTTCTCCGGCTCCGGCTCCTCCT 1016 Query 79110 ACGTCATCGGCAAAGC--TGAAGCCACGGCAGATGAGGACTGGGACTTCTGA 79159 |||| |||||||| || |||| ||||| || |||||||||||||||||| Sbjct 1017 ACGTGATCGGCAAGGCCGTGAA--CACGGAGGACGAGGACTGGGACTTCTGA 1066 >seq939 Length=10641 Score = 253 bits (280), Expect = 1e-62 Identities = 258/336 (77%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 69633 GACACCGTCATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGGTTCACGCCC 69692 |||||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| Sbjct 9518 GACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCCG 9459 Query 69693 TCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCGGTACTTCGACAAGCAG 69752 ||||| ||||| || || ||||||||||| ||||| |||||||| ||||||| |||| Sbjct 9458 TCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAG 9399 Query 69753 TCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGGCGCGAGTAC 69812 ||||||||||| || || | || ||| |||||||| || ||||| ||| Sbjct 9398 AGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCG 9339 Query 69813 GCCGAGAACGTGACTGAGTCGCTCCAGAAGGGCGCCCGCGTCATCGTCCAGGGCAAGCTC 69872 |||||||||||| | ||||| ||| |||||| ||||||| |||||||||||| ||| Sbjct 9338 GCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTC 9279 Query 69873 AAGCAGCGGTCCTACGAG---AAGGATGGCCAGCCGCGCACCACCTTCGAGCTCGAGGTT 69929 ||| || || |||||| ||||| || ||| ||||||| | |||||| || || Sbjct 9278 AAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTG 9219 Query 69930 GAGGAGATCGGCCCCGCACTCCGGTACGCCACCGCC 69965 || |||||||||||| | | |||||| |||||| Sbjct 9218 GACGAGATCGGCCCCTCCATGAAGTACGCGACCGCC 9183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299301981152804