Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_030930.1 Length=46570 Score E Sequences producing significant alignments: (Bits) Value seq4725 80.6 8e-11 >seq4725 Length=1188 Score = 80.6 bits (88), Expect = 8e-11 Identities = 122/174 (70%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 39035 GCGGCCCGGCTGGTGATCGAGACACAGTTCGCGTCCGGGTCGATGCTGCAGCGCAAGCTT 39094 || ||| |||||| ||| || ||||||| ||| ||| ||||||||||||||||| Sbjct 181 GCCGCCGAGCTGGTCATCACCACCCAGTTCGGCTCCACGTCCATGCTGCAGCGCAAGCTG 240 Query 39095 CGCGTCGGCTATGCGCGCGCCGGACGCCTGCTCGACGAGCTCGAGGCGCTCGACATCGTC 39154 ||||| |||| || ||||| || || | ||| ||||||| | | | | || Sbjct 241 CGCGTGGGCTTCGCCAAGGCCGGGCGGCTCATGGACCTGCTCGAGTCCCGGGGAGTGGTG 300 Query 39155 GGCCCCGCACAGGGCAGCAAGGCCCGCGAGGTGCTCGTCGATGCCGCCGACGTC 39208 |||| | ||||| ||||||||| || ||||| ||| | ||| |||| || Sbjct 301 AGCCCGTCCGAGGGCTCCAAGGCCCGGGACGTGCTGGTCAAGCCCGACGACCTC 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148892890534352