Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq939 279 3e-70 >seq939 Length=10641 Score = 279 bits (308), Expect = 3e-70 Identities = 264/337 (78%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 72306 CGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCC 72365 ||||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||| || Sbjct 9519 CGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC 9460 Query 72366 CTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCA 72425 || || || | || |||||||||||||| || |||||| || ||||||| ||| Sbjct 9459 GTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCA 9400 Query 72426 GAGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCC 72485 ||||||||||||||| ||| || | || ||| |||||||| | ||||| ||| | Sbjct 9399 GAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGC 9340 Query 72486 GGCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCT 72545 |||||||||||| || ||||| || |||||||||| ||||| ||||||||||| ||||| Sbjct 9339 GGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCT 9280 Query 72546 CAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGT 72605 |||| ||| |||||||| |||||||| ||| ||| || || |||||| || || Sbjct 9279 CAAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGT 9220 Query 72606 CGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGCC 72642 || |||||||||||| | || |||||| |||||| Sbjct 9219 GGACGAGATCGGCCCCTCCATGAAGTACGCGACCGCC 9183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300153125361432