Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq2192 87.8 6e-13 >seq2192 Length=3158 Score = 87.8 bits (96), Expect = 6e-13 Identities = 90/114 (79%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 53719 ACAGATCGGATCGACTCCGTGTTCATCGCGGTGAGCCG--CGACGAACTCCACGATCAGC 53776 ||||||||| ||||| ||| |||| || || || | ||| | |||||||||||| | Sbjct 2828 ACAGATCGGCTCGACGCCGAACTCAT-GCT-TGTGCTGGTCGATGTACTCCACGATCAAC 2771 Query 53777 GCTGTGGGCGGTCGATCTCCGCCGCAAAGAAAGCCGAAGCCTGCTTCAAGATCG 53830 ||||||||||||||| ||||||||| || |||||||| || | ||| ||||| Sbjct 2770 GCTGTGGGCGGTCGAGCTCCGCCGCGAAAAAAGCCGAGGCTGACCTCAGGATCG 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175835169789472