Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq4782 84.2 3e-11 >seq4782 Length=1171 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355 || ||| | || |||||| || || | ||| | ||||||||||| ||||||||||| Sbjct 143 TGCCAGCTCTACCAGCGCTCGGCGGACCTGTTCCTGGGCGTGCCGTTCAACATCGCCTCC 84 Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTCGTC 203415 || || | || || | |||| | || |||||| | || ||||| ||| |||||||| Sbjct 83 TACGCGCTGCTCACCGTGATGTTGGCCCAGCAGTGCGACCTGGTGCCCGGCGAGTTCGTG 24 Query 203416 TGGACAGGCGGTGA 203429 ||||| ||||| || Sbjct 23 TGGACCGGCGGGGA 10 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| ||||| ||||| ||||| |||| || |||||||| |||||| || | ||| Sbjct 642 AAGACGGACCGCACCGGGACCGGGACGCTGTCGGTGTTCGGGCGCCAGATCCGCTACGAC 583 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 || | | |||||| ||| ||||||| || || ||| |||| || | | | Sbjct 582 CTCAGCTCCTCCTTCCCCCTGCTGACCACCAAGCGTGTGCACTTCCGCTCCGTGGCGCTC 523 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||||||||||||||||| || | ||||| | | | ||| | || |||||| Sbjct 522 GAGCTGCTGTGGTTCCTCTCCGGCTCCTCCAACGTGCGCTGGCTGCAGGAGCGCGGGGTG 463 Query 202723 ACTATCTGGGACGAATGGGCG 202743 | ||||||||||| |||||| Sbjct 462 AGCATCTGGGACGAGTGGGCG 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788267005188000