Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq939 266 2e-66 seq2192 87.8 1e-12 >seq939 Length=10641 Score = 266 bits (294), Expect = 2e-66 Identities = 261/337 (77%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 72619 CGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCC 72678 ||||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||| || Sbjct 9519 CGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC 9460 Query 72679 CTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCA 72738 || || || | || |||||||||||||| || ||||||||| ||||||| ||| Sbjct 9459 GTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCA 9400 Query 72739 GTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCC 72798 | |||||||||||| ||| || | || ||| |||||||| | ||||| ||| | Sbjct 9399 GAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGC 9340 Query 72799 GGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGCCT 72858 |||||||||||| | ||||| || ||||||||| ||||| ||||||||||| ||||| Sbjct 9339 GGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCT 9280 Query 72859 CAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGT 72918 |||| ||| |||||||| |||||||| ||| ||| || || |||||| || || Sbjct 9279 CAAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGT 9220 Query 72919 CGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGCC 72955 || |||||||||||| | || |||||| |||||| Sbjct 9219 GGACGAGATCGGCCCCTCCATGAAGTACGCGACCGCC 9183 >seq2192 Length=3158 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/114 (79%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 6763 CGATCTTGAAGCAGGCTTCGGCTTTCTTTGCGGCGGAGATCGACCGCCCACAGCGCTGAT 6822 ||||| ||| | || |||||||| || ||||||||| |||||||||||||||| |||| Sbjct 2717 CGATCCTGAGGTCAGCCTCGGCTTTTTTCGCGGCGGAGCTCGACCGCCCACAGCGTTGAT 2776 Query 6823 CGTGGAGTTCGTCG--CGGCTCACCGCGATGAACACGGAGTCGATCCGATCTGT 6874 |||||||| | ||| | || || || |||| ||| ||||| ||||||||| Sbjct 2777 CGTGGAGTACATCGACCAGCACA-AGC-ATGAGTTCGGCGTCGAGCCGATCTGT 2828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299650758290926