Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq4782 167 1e-36 seq464 84.2 1e-11 >seq4782 Length=1171 Score = 167 bits (184), Expect = 1e-36 Identities = 243/342 (71%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 782 ACACCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGC 841 ||||| ||||| |||||| |||| ||| ||||||||| || | | | ||| || ||| Sbjct 690 ACACCGTACGAGGACCTGCTGCGGGACGTCCTGGAGAACGGGACGCCCAAGACGGACCGC 631 Query 842 ACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGC 901 ||||| ||||| |||||| |||||| |||| | || |||||||||| | | Sbjct 630 ACCGGGACCGGGACGCTGTCGGTGTTCGGGCGCCAGATCCGCTACGACCTCAGCTCCTCC 571 Query 902 TTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGG 961 ||||| ||| | ||||| ||||| || |||||| || || ||| ||| || |||||| Sbjct 570 TTCCCCCTGCTGACCACCAAGCGTGTGCACTTCCGCTCCGTGGCGCTCGAGCTGCTGTGG 511 Query 962 TTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGAC 1021 |||||| ||| | | |||||| ||| | || ||| || | |||||||||| Sbjct 510 TTCCTCTCCGGCTCCTCCAACGTGCGCTGGCTGCAGGAGCGCGGGGTGAGCATCTGGGAC 451 Query 1022 GAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGG 1081 |||||||| |||| ||| |||| ||||| || ||||||| ||||||||| |||| Sbjct 450 GAGTGGGCGGACGAGAACGGGGACCTGGGTCCGGTGTACGGCGTGCAGTGGCGCAGCTGG 391 Query 1082 CATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCG 1123 | | || | |||| ||| | ||| ||||||||| || Sbjct 390 CCCGCCGGGCACGG-GGA-----GACGATCGACCAGATCGCG 355 Score = 118 bits (130), Expect = 6e-22 Identities = 156/218 (72%), Gaps = 15/218 (7%) Strand=Plus/Minus Query 1205 ATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGT---------CGTCGACGGC 1255 ||||| || | |||||||||| |||||||| | ||||| || |||||| Sbjct 218 ATGGCGCTGCCCCCGTGCCACGCGCTGTTCCAGTTCTACGTGCAGCCGCGCGAGGACGGC 159 Query 1256 CGGCTCTCGCTG------CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCG 1309 | | | | ||| ||| ||||||||||| |||||| ||||||| || |||||| Sbjct 158 CCGGACGCCCTGAGCTGCCAGCTCTACCAGCGCTCGGCGGACCTGTTCCTGGGCGTGCCG 99 Query 1310 TTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGG 1369 ||||| |||||||| |||||||| ||| | ||||| || |||||| || |||| | Sbjct 98 TTCAACATCGCCTCCTACGCGCTGCTCACCGTGATGTTGGCCCAGCAGTGCGACCTGGTG 39 Query 1370 GTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACAT 1407 || ||| | | ||||||||||| ||||||||||| Sbjct 38 CCCGGCGAGTTCGTGTGGACCGGCGGGGACTGCCACAT 1 >seq464 Length=23305 Score = 84.2 bits (92), Expect = 1e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 1160 CGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCG 1219 ||||||| |||| | || || |||||| | ||| || | ||| |||||||| | ||| Sbjct 1643 CGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATCTGAACGAGATGGCACTGCCACCG 1702 Query 1220 TGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAG 1279 |||||||| | | ||| | ||||| | ||||| | | ||| ||| | |||||| Sbjct 1703 TGCCACATGTTCTGCCAATTCTACGTGGCGGACGGGGAGTTGTCGTGTCAGATGTACCAG 1762 Query 1280 CGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCT 1335 ||| || |||||| || ||||||||||| || || || |||||||| || Sbjct 1763 CGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTAACATTGCAAGCTACGCGCTGCT 1818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296111790265578