Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq2959 774 0.0 seq5028 315 2e-81 >seq2959 Length=2134 Score = 774 bits (858), Expect = 0.0 Identities = 1484/2153 (69%), Gaps = 92/2153 (4%) Strand=Plus/Plus Query 39299 CACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTC 39358 ||||||||||||||| | || ||| |||||||| | ||||||||||| | |||||||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 39359 CTCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTT 39418 | | | |||||||||||| || |||||| ||||| ||||||||||| || |||||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 39419 CGTGTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTC 39478 ||||| ||| | ||||||| |||||||| ||||| || |||| | ||| |||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 39479 CTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTG 39538 ||||||||||||||| || || |||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 39539 GAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGG 39598 ||| || || ||||| || | ||||||||||||||||| | |||||| | || Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 39599 GATGTTCTCCAGGTCGA---CGTGCTCCCCACGGTTGGCGCG-GATGTTCTCGACCGCGT 39654 | || ||||||||| | || | | ||||| ||| ||||||||| | ||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTTCA-GCGTGATGTTCTCCAGCGCGT 377 Query 39655 CGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCT 39714 || |||||||||||||| || ||||| |||||||||||||| | | ||||||| || Sbjct 378 CGGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCT 437 Query 39715 CGCACTGGGGGTAGTCCCACTGCGTCACGGTCACG---CCGTCCGCAGGGCGGACCCACA 39771 ||||| ||||||||| |||| || | |||| |||||| |||| | | Sbjct 438 CGCACGTGGGGTAGTCGAACTGGGTGA---TCACCTGACCGTCCTGCTCGCGGCGCATGA 494 Query 39772 CCGGGAGGTGATCGACCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCA 39831 ||||| | |||| || ||| || |||||||||||| || || ||||| || ||| Sbjct 495 GCGGGATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCC 554 Query 39832 TCTGCCGGACGAGACCTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGT 39891 ||| || ||| || || || || | || || |||| ||||| | | || || |||| Sbjct 555 ACTGGCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGT 614 Query 39892 CGTTCTCGTACAGCCCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGA 39951 ||| |||| || | | || | ||| || ||||||||||||||| | ||| || | Sbjct 615 CGTCCTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGT 674 Query 39952 AGATGCCCTCCAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCT 40011 ||| | ||| ||||| || |||||||| ||||| | ||| |||||||| ||| Sbjct 675 AGACGTCCTGCAGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGCC 734 Query 40012 TCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCG 40071 ||| || | ||| || | | | |||||||| | | |||||| | ||| | | Sbjct 735 GCTCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTGG 794 Query 40072 CCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGA 40131 ||||||| ||| | || ||||| || || || | ||||||||||| |||| Sbjct 795 CCTTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTCGCCGTACTTCTCCGTGA 854 Query 40132 CGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGG 40191 |||| |||||| ||| || || ||||| |||||||| | ||| | ||||||||||| Sbjct 855 CGTAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATGG 914 Query 40192 ACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGT 40251 ||||||| || ||||| ||||| ||||||||||| |||||||||| || |||| ||| | Sbjct 915 ACACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGCT 974 Query 40252 CTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGA 40311 | ||||||| | | ||| || |||| ||||||||| | || ||||| ||||| || | Sbjct 975 CGGTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCCA 1034 Query 40312 CCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACG 40371 | | | |||||| ||||||| |||| ||||||||| ||||| |||||||||||| | Sbjct 1035 CGCGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCGG 1094 Query 40372 GGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTGCCATGCTCGTAGT 40431 |||| |||| ||||||||| || | ||||||||| ||||| || | ||| || Sbjct 1095 GGAAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCT---CACGGACGTCGT 1151 Query 40432 C---GGTCCCGTTCGGGAA-CCGTCGAGCTGCACCACGGTGGACCTCGTCCTCGAACCAC 40487 | | ||||| |||||| | || | || || || | |||||| | ||||||| Sbjct 1152 CCGGGATCCCGCCCGGGAAGCGGTAGTGCAGC-CCCTTCTCGACCTCCTTGATGAACCAC 1210 Query 40488 GTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCATG-AG--GTCGGTGTGCTCG 40544 | |||| | ||||||||| ||||||||| |||||| || | ||| | ||| Sbjct 1211 GAGGTCTCGTCCTCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGTTGGCGGAGGTGTCG 1270 Query 40545 AACATGCCAGTCGTGTCGACGCGCTCGGCGATCTCCAGCGTGGT-CCGCATCCCCC---- 40599 ||| ||| ||| |||||||||||||||||| ||| | |||| || | Sbjct 1271 AAC--TCCA----CCTCGCAGCGCTCGGCGATCTCCAGGGTGTTGTCGCACGCCTCGGGG 1324 Query 40600 -ACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTGATGTAGTAC 40658 | |||| || | || ||| || ||||| ||| ||||||| |||| || Sbjct 1325 AAGTCCC----GGAACAG--CTCG-----CG-CATCTGCTCGGGGGACTTGAGGTAGAAC 1372 Query 40659 CCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCAG 40718 || | |||||| |||||| || |||| | | ||| | ||||| ||| ||||| Sbjct 1373 TCGTCCGCGTCGAACTTGAAGCGCTTGGGGTCCTGCAGCGTGGAGCCGGACTGCACGCAC 1432 Query 40719 AGCAGAGCGTCGTGCGCGGTGCTCTCCTCGGCCGTGACGTAGTGCGAGTCGTTCGTGACC 40778 ||||| || |||| | || |||||||| | ||||||| |||||| ||| || Sbjct 1433 AGCAGCGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGGCC 1492 Query 40779 ACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGCGGACACGCCGCTCG 40838 ||| | | || |||| |||| |||| || ||||| | | |||||| |||| Sbjct 1493 ACGAGCGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCTCG 1552 Query 40839 ATCTCCAGGCCGTGGTCCATGATCTC-CAG--GAAGTACCGGTCCCGACCGAAGACCTCC 40895 || |||| ||||||||||| | || ||| ||||| | ||| ||||||| ||| Sbjct 1553 ATGCCCAGCCCGTGGTCCATCAGTTCGCAGTAGAAGTTC---TCCGCCCCGAAGATGTCC 1609 Query 40896 AGGTA--CCG-GCCAGCCTCGGCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTC 40952 || | ||| | | |||| | || |||||||||||||| || || ||||||||| Sbjct 1610 CGGAACTCCGCGGCGGCCTTG---ACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTC 1666 Query 40953 ATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGTGCTCGGCGACC 41012 | | | ||| ||||| ||||||||| |||| || |||| | || || | | | Sbjct 1667 TGCACCTCGCCGGACGGGCAGCCCGTGGTGGCGATGAGCCCCTTGCCGTACTGGTTCAGC 1726 Query 41013 AGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACG-AGCGGGAGCT 41071 || || ||||||||| || ||| ||| |||||||| || ||| || | Sbjct 1727 AGCTCCCGGTCCATGCGGGG---CTTGTACAGCTGGCCCTCCAGGGACGCCTTGGTGGAC 1783 Query 41072 GAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTA 41131 | || | ||||| |||| ||| || || ||| || | || | ||||||||| Sbjct 1784 GCGC-GGAACAGGTTCTGCATGCCCTCGCTGGACTGCGCCAGCAGGGTCATGTGCGTGTA 1842 Query 41132 CGCACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGC-CCCACTTGAC----- 41185 || ||| |||| ||||||| ||| | || | || | | |||| || Sbjct 1843 GGCGCCGGCACCGGATACGTCGT--CGC-----GGCCGCCGTCCGCGAACTTCACGCGGG 1895 Query 41186 -GCGCTCCTGGTCGAAGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCT 41244 ||| |||||| || ||| | |||||| | | ||| ||||| | |||||||||||||| Sbjct 1896 TGCGGTCCTGG-CG-GGCG-GTGCCCGGCGTGAGGTAGGCCTCCACGCCGATGATCGGCT 1952 Query 41245 TGACCCCAGCGGCCTGAGCCGTGGTGAAGAAGTCGTGGGCACCGTGCAGGTTGCCGTGGT 41304 ||| || || || | ||| || | |||||||| || ||| || | ||||||| Sbjct 1953 TGATGCCGGCCGCGCGCGCCTTGTTCCAGAAGTCGAACGCCCCGAACACGAACCCGTGGT 2012 Query 41305 CAGT----GACTGCGACTGCCGGGGAGCCCTGTCG--GGCAACCTCGGCGACCATTTGCT 41358 | || | | |||| | | |||| | || |||| ||| ||| | | | Sbjct 2013 CCGTGGTGGCCAGCGAGTCC----ATGCCCAGCCGGTGGCA--CTCCTCGAAGAGGTCGT 2066 Query 41359 TCATCCGAGCGGCCCCGTCGAGGAGCGAGTACTCGGAGTGGTTGTGGAGGTGG 41411 ||| || ||||| ||||| || | |||||||||| ||| |||||| ||| Sbjct 2067 TCAGGCGCGCGGCACCGTCCAGCATGGAGTACTCGGTGTGCACGTGGAGATGG 2119 >seq5028 Length=1094 Score = 315 bits (348), Expect = 2e-81 Identities = 426/584 (73%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 38702 GTCGAAGGCACCGGCCTTGATCAAGGACTCGATGGCACGCTTGCTCACGGTCGCCTGAGT 38761 |||||| ||||||||||||| || ||||||||||| |||||| | | | || | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTT---GCACACCACCGC 525 Query 38762 CGCAGCCTT---CAGGAAGTCCGGCAGGGAAGTGAACTTCCCCCAGGCTTCCCGGAGTTC 38818 || | |||| ||||||||| | ||| |||||||||||| | | ||| || Sbjct 524 CGGAACCTTGGCCAGGAAGTCGTTGAAGGACGTGAACTTCCCCTGCTCGTTGCGGGCGTC 465 Query 38819 GGCGATCTCCTGGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGAT 38878 | || ||||||||| | |||||||||| ||| ||| || ||||||||||| Sbjct 464 CACCATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCGGAT 405 Query 38879 CTCCGTCTTCCCGTTCGGGGTGAAGGAGCTGTTCGAGAC-CGA-CACGTCGGGCGGCAGG 38936 || || | | ||||||||| | | ||| ||| || |||||| |||||||| Sbjct 404 GTCGGTGCCCACA---GGGGTGAAGTT-CAGCTCG-GACTCGTTCACGTCCGGCGGCAGC 350 Query 38937 AC-GTGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTC 38995 || |||| | ||||| | || |||| ||||||| |||||| ||||| ||||||||| Sbjct 349 ACCGTGATG-CCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCGTC 291 Query 38996 GCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGC 39055 ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| Sbjct 290 GCCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGC 231 Query 39056 CGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGC 39115 || | ||| | || || ||||| ||||| ||||||||||||||||| ||||| | | Sbjct 230 GGTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCCGA 171 Query 39116 GAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCG 39175 ||| || | || | |||||||| ||||| ||| || | || |||||||| || || Sbjct 170 GAACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCCAC 111 Query 39176 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39235 | |||| || || | | ||| |||| |||| || | ||||||||||||||| Sbjct 110 CATGCCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCCAT 51 Query 39236 GGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGA 39279 ||| |||||||| | ||| ||||| || || ||| || |||| Sbjct 50 GGCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGCGA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160130572807984