Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq464 89.7 2e-13 >seq464 Length=23305 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 52080 TCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTC 52139 ||||| ||||| | |||| || | || ||||| || | || ||||| | | | | Sbjct 1658 TCTGCGTGGAACCCTGCTGATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGC 1717 Query 52140 CAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATG 52199 |||||||| || || || || || | ||||| || |||| ||||| || ||||||||| Sbjct 1718 CAATTCTACGTGGCGGACGGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATG 1777 Query 52200 T-TCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCT 52249 |||||| || |||||||||||||| ||||| | |||| |||| ||| Sbjct 1778 GGTCTTGGT-GTGCCGTTTAACATTGCAAGCTACGCGCTGCTTACGCGTCT 1827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190083859756580