Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq939 109 3e-19 >seq939 Length=10641 Score = 109 bits (120), Expect = 3e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 74522 TCACAGTGACCGGTAATCTGGCCG--GTCCAGTTGAGTTGAGGTTCACTCCGAGTGGGGT 74579 ||||||||| ||| |||||| ||| | || || | | ||||| ||| || | Sbjct 9508 TCACAGTGATCGGAAATCTGACCGCAGACCCC--GAACTTCGCTTCACGCCGTCCGGAGC 9451 Query 74580 TGCGGTAGCCAATTTCACTGTGGTGTCAAATCCCCGGAGATTCGACAAGCAAACGAATTC 74639 || || ||||| ||||| || | ||| | || || |||||| ||| | || Sbjct 9450 CGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAGAGCAACGA 9391 Query 74640 CTGGATTGACGAGGAGCCATGGTTCGTACGTTGCAACATCTGGCGTGACGCGGCCGAGAA 74699 |||| ||| |||| | ||| | || ||| | |||||||| ||||||||||| Sbjct 9390 GTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCGGCCGAGAA 9331 Query 74700 TGCCGCAGAGTCGCTTGACAAGGGCACTCGAGTGATCGTCCAGGGGCGTCTCAAGTCCCG 74759 | || ||||| || ||||||||| || |||||||||||||| || |||||| | || Sbjct 9330 CGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTCAAGGCACG 9271 Query 74760 GTCATATACCACCAACGAAGGCGAGGATCGAACGGTCCTTGAGCTCGAGGTCGATGAGAT 74819 || || ||||| ||||| ||| || || | ||||| || || || ||||| Sbjct 9270 CTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTGGACGAGAT 9211 Query 74820 CGGACCCTCGCTGCAGTGGGCCACTGCTAAGGTTCAGCGCACCGAACGAGGCGGCGGAAA 74879 ||| ||||| || ||| || || || ||| | | || | | || ||||| ||||| Sbjct 9210 CGGCCCCTCCATGAAGTACGCGACCGCCAAGATCAACCGGAACTCGCGCGGCGGAGGAAA 9151 Query 74880 C 74880 | Sbjct 9150 C 9150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313889824939026