Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031252.1 Length=51290 Score E Sequences producing significant alignments: (Bits) Value seq939 150 6e-32 >seq939 Length=10641 Score = 150 bits (166), Expect = 6e-32 Identities = 231/327 (71%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 30898 ATGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGG 30957 ||||| || || || ||||||||||||||||| ||||| || || || || || Sbjct 9527 ATGGCTGGCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGC 9468 Query 30958 TTCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTC 31017 ||||||||||| || ||| || || |||||||| | ||| ||| ||||| | ||| Sbjct 9467 TTCACGCCGTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTC 9408 Query 31018 GATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCGC-GCTGCTGTCTG 31076 || || ||| ||||||||||||||| || || || ||| ||||| ||| | || || Sbjct 9407 GACCGGCAGAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCT-CGGTGTG 9349 Query 31077 GCGCGAGACTGCAGAGAATGTCGCAGAGTCCCTGCAGAAGGGCATGGAGGTCATCTGCGT 31136 ||| ||| | || ||||| || || |||||||| ||||||| || ||| | Sbjct 9348 GCGTGAGGCGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCA 9289 Query 31137 CGGGCGTCTGAAGTCGCGCAGCTACGAGACGAAAGAGGGCGAGAAGCGCACTGTCATCGA 31196 || || || ||| | ||| |||||||| || || || ||| ||||| || ||| Sbjct 9288 GGGCCGCCTCAAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGA 9229 Query 31197 GCTCGAAGTCGACAGCATCGGCCCGTC 31223 ||| ||||| ||| |||||||| || Sbjct 9228 GCTGGAAGTGGACGAGATCGGCCCCTC 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163995925936272