Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq191 311 8e-80 seq19 203 3e-47 seq47 131 1e-25 seq1068 127 2e-24 >seq191 Length=41755 Score = 311 bits (344), Expect = 8e-80 Identities = 993/1525 (65%), Gaps = 31/1525 (2%) Strand=Plus/Plus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| || | || |||||||| | ||| ||||| || ||| |||| |||| || ||| Sbjct 19531 AACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCA 19590 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| |||| |||||||| ||||| || || |||||||| |||| || |||||||| Sbjct 19591 TTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTG 19650 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACA-GATCG--GAC 22642 | | ||||||||| | || ||||||| | ||| ||||||| | || ||| Sbjct 19651 CGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGAC 19710 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || || || | ||||||| ||| | || || | || || || || || | | Sbjct 19711 GGGGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGG 19767 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGC-CTCCAACGCGCCGTA 22761 |||| |||||||| || | ||| | || || | | ||||| | |||| Sbjct 19768 AACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTA 19826 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCGTACGGCA 22820 || || ||||||||||| ||| |||| | ||| ||| ||| ||| ||| ||| || Sbjct 19827 GTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG-GCTCTCGAACG-CA 19884 Query 22821 TACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || ||| | | || || ||||| | |||||| ||||| ||||| | ||| |||| Sbjct 19885 TAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGG 19944 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || || ||| ||||| || || || | || || || ||||| Sbjct 19945 CGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTC 20004 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 ||||| | |||||| | || || | | ||| | | || || || Sbjct 20005 AAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCC--AT 20062 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || |||||||| || ||| | || || || ||||| || |||||||| || Sbjct 20063 CCTCCA-CAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGC 20121 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 ||||||||||| | ||| ||| || | ||||| | |||||||| | || | Sbjct 20122 GACGTGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGC 20181 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 ||||| || || ||| || |||||||| |||||| ||||| ||||||||| | | Sbjct 20182 TGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATC 20241 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCTGCC 23238 |||| || | ||| || ||||| ||| || | || | | || || | || Sbjct 20242 TGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCC 20301 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 | |||| |||||||| | ||||| | || || ||| | || | || ||| || || Sbjct 20302 TCCTTC-TCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCC 20360 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 ||| | | | || || | || |||||| | || ||| || || |||| || Sbjct 20361 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 20420 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || | ||| ||||||||||| || ||||| ||||| | ||| |||||| Sbjct 20421 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTG 20480 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| || |||| || || |||||||| || ||||||||||| ||||| | ||| Sbjct 20481 GTTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGC 20540 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 |||| ||| | ||| || ||||| || || || |||||||||| ||| | || Sbjct 20541 GAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGAC 20600 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT 23598 || ||||| || | || |||||||| | ||| | || ||| | | | || | Sbjct 20601 CCTCAGCATGGGGATGATCCCGTTGGATGATCCG--TTCG--TGCCGCGGATGTAGCTGT 20656 Query 23599 T----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || | |||||| | | | || || |||||| || | || || || || Sbjct 20657 TCGTGGCGCGGATGTTGTGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACG 20716 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 |||| || || || |||||||| |||||||| || ||| || | | || | || || Sbjct 20717 CGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGA 20776 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 ||||||| |||| |||| ||||| |||| || || || || | ||||||| Sbjct 20777 AACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCG 20836 Query 23775 TAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGT 23834 ||||| | | ||||| || | ||||||| | || || | ||||| | || Sbjct 20837 TAAAGAACATCTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGT 20896 Query 23835 GTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGT 23891 | ||||| | || |||||||| ||||| | || || | || ||||| | |||| Sbjct 20897 GAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTT---TCCGT 20953 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | | ||| || || || | | ||| || || || || ||||| || | ||||| Sbjct 20954 TCACGCGGAAGAGGTAGCCCCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21013 Query 23952 CACGATCGTGCACTATGGCCGAATT 23976 | || ||||| | |||||||| || Sbjct 21014 CCCGGTCGTGGATGATGGCCGAGTT 21038 >seq19 Length=94326 Score = 203 bits (224), Expect = 3e-47 Identities = 561/842 (67%), Gaps = 30/842 (4%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 1083 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGAC 1024 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | || |||| || |||| ||| | || ||| | | || || || Sbjct 1023 CTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAG 964 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || ||||| || ||| || || || |||||||| ||| ||| || Sbjct 963 CACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGG-CGAT-GA 906 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| || ||||||||| ||||||| | ||||| ||||| || || | |||| Sbjct 905 ACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCA 846 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || |||| ||||| || ||||| |||||| | |||||| || Sbjct 845 TCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCG 786 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCA 57923 ||||| | || | || ||||| || || || ||| | | |||||||| Sbjct 785 TGGAGAAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCG-TGGAGAAGAAGGCC 727 Query 57924 GAGTGGTCAATCAAATGGATAAAAA---GCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 ||| | |||| ||| | | | || || | | | ||| | || | Sbjct 726 CGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCC---TACCCGGAGCGTCTGCTG 670 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 |||||||||||||| || || || ||||| ||||| ||| ||| | || || ||| | Sbjct 669 GCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGC-TCCATCTTCTGGCT 611 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||||| ||||| || |||| || |||||| | || || ||||| Sbjct 610 CAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGA 551 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 ||| | || || || || |||||||| |||||||| | | || || || | || Sbjct 550 GGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAACAA---GCTGCC 494 Query 58160 GGATCGCATCTTGGAC---ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 ||| || | || || || | || || || | ||| || | ||||| || | Sbjct 493 GGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAG 434 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| | || || |||| || |||| |||||| || | |||| ||||||| || Sbjct 433 CGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGA 374 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTC----AT-TACAACACG 58331 ||| || |||||| | | |||| | ||| | ||| | || || || |||||| | Sbjct 373 GTTCGTGGCCGACCGCC---TGCT-GTACTCACTGG-GTGCATCCAAGATCTACAACGTG 319 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391 || || ||||| || | ||| || |||||||||| |||||||||| ||||| ||||| Sbjct 318 AAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAG 259 Query 58392 AA 58393 || Sbjct 258 AA 257 >seq47 Length=71270 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| |||| ||||| || ||||| | ||||| || || Sbjct 50413 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCT 50472 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||| ||| | ||||||||| Sbjct 50473 TCGGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 50532 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 50533 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 50592 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || |||| || Sbjct 50593 AACATCCAGAAGGAGTCTACGCTGCACTTGGTGCT 50627 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | ||||| || || || Sbjct 50643 CATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTC 50702 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||| ||| | ||||||||||| Sbjct 50703 GGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 50762 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || || Sbjct 50763 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 50822 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || |||| || Sbjct 50823 CATCCAGAAGGAGTCTACACTGCACTTGGTGCT 50855 >seq1068 Length=8813 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 3582 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCC 3641 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||||||| | ||||| || Sbjct 3642 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGA 3701 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 3702 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 3741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740701567040