Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq47 84.2 2e-11 seq1068 82.4 6e-11 >seq47 Length=71270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || ||||| |||||| || |||||||| || || | || || |||||| Sbjct 50853 CACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGACCGTCCT 50795 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | ||||||||| || ||| | | |||||||| Sbjct 50794 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTT 50735 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||||||||||| | | | || |||| || | || |||| || | || ||||| Sbjct 50734 GGATTTTCTGCTTCACGTTGTCG--ATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGT 50677 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | || ||||| || |||||||| Sbjct 50676 CTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50644 >seq1068 Length=8813 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | |||||||| || ||| | | |||||||||| ||||||||||||| | Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3656 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | ||| || | || ||||| || || || || || ||||||| Sbjct 3655 CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 3596 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 3595 AGATCTGCAT 3586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421227521996612