Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq39 102 6e-17 seq47 87.8 1e-12 >seq39 Length=75733 Score = 102 bits (112), Expect = 6e-17 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || |||||||||||||||||||||||||| || | Sbjct 36034 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 36093 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || ||||| |||||||| || Sbjct 36094 AAGAGTG-CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 36147 >seq47 Length=71270 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| || ||||| ||||||||| |||||||| || || Sbjct 50642 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 50584 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 50583 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 50524 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 50523 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 50494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397040081618824