Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq191 269 3e-67 seq19 187 3e-42 seq357 98.7 1e-15 seq278 82.4 9e-11 >seq191 Length=41755 Score = 269 bits (298), Expect = 3e-67 Identities = 1126/1754 (64%), Gaps = 76/1754 (4%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 19218 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 19277 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | || || | ||| | ||||| ||| || ||| || || Sbjct 19278 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 19337 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||||||| || || | ||| ||||| |||||| |||||||| || |||| Sbjct 19338 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 19397 Query 113782 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGAGCCACCCGCCTTGAC 113838 | ||| | | || || || | ||| || || | ||||||||| | | Sbjct 19398 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 19454 Query 113839 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 || | | || || | ||||| || | || | || |||| || ||| | Sbjct 19455 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 19514 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || | |||||||| || || ||| | || || || | |||||| Sbjct 19515 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 19574 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 19575 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 19634 Query 114019 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC 114078 || ||| || ||| |||| || | | | | | |||||||| || |||| || Sbjct 19635 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 19694 Query 114079 GTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 | | || | || | ||| ||||| || ||||||| |||||| | | Sbjct 19695 CCACAAGCCCGAAGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATACCCTTGCT 19751 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 ||| |||||||||| || |||||||| |||||| | |||| | || | || | Sbjct 19752 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTC 19802 Query 114193 C-TCGAGGGCT--------GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCC 114241 | |||||| || |||| || || ||||| || ||| ||||| || Sbjct 19803 CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAG 19856 Query 114242 TT---GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 114295 || || || | || || ||||| ||| || | |||||| ||||||||||| Sbjct 19857 TTCACGGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGA 19914 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 114355 || ||||| || | |||| ||||| || | ||| || ||||| || || ||||||| Sbjct 19915 CCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACG 19974 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 || || | || || || ||| | || | || ||| || ||||| || | || Sbjct 19975 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 20034 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 | ||||| | ||| | || | || | || | ||| |||| || ||||| | Sbjct 20035 TACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACA 20088 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 |||||||| || ||||| | |||||| |||||||| ||||| || ||| Sbjct 20089 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCAC 20148 Query 114536 AAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || || ||| || ||||| | ||||| || || ||||| ||| ||| Sbjct 20149 AAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 20205 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||| | ||| |||||||| | || | | || || || ||| Sbjct 20206 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA- 20264 Query 114653 ACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | || | |||| | | | ||| || |||||||||| ||||||||| ||| Sbjct 20265 -CAGCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTA 20321 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | || ||||| || ||| | ||| |||| || || |||| || |||||||| Sbjct 20322 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 20381 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || ||| | || | | || |||||||||||||| || || |||| ||| ||||| Sbjct 20382 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 20441 Query 114829 TGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 ||||||| || || || | || | || | || || || |||| ||||| | Sbjct 20442 GTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGA 20500 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | | || ||||||||||| |||||||| | |||| || || || || | Sbjct 20501 ACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGC 20560 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 || |||||| ||||| | || ||| |||| || || | ||||| || ||||| | Sbjct 20561 CTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCC 20620 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 | | ||| || || || || || || || |||| | || | || ||| Sbjct 20621 CGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGC 20680 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| | Sbjct 20681 TAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 20740 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || |||||||| ||| | || | ||||| || ||||| || || | | Sbjct 20741 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 20800 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 115243 | || || ||||| ||||| || || |||||||| | || | || | || ||||| Sbjct 20801 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGC 20859 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 || || || | || | || | ||||||| | ||||||||| | || || ||||| Sbjct 20860 TCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATG 20919 Query 115304 AACATGTATTGGGG 115317 | ||| | ||||| Sbjct 20920 ATCATCTGCTGGGG 20933 >seq19 Length=94326 Score = 187 bits (206), Expect = 3e-42 Identities = 372/538 (69%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 230 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 289 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCAATCT 125864 || | ||||| | || || |||||||| ||| | || | | |||||| | | Sbjct 290 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC-AGTGA 348 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 || || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 349 GTAC-AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 407 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 |||| || | ||||||| ||| | |||| | | |||||| |||| || || | Sbjct 408 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 467 Query 125985 GCACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTC 126042 ||||||| ||||| | | | | || ||| | | || ||| || | | | | Sbjct 468 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 526 Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 |||| | || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 527 CACG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 585 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || |||||||| || |||||||| | |||||| || | || || |||||||||||||| Sbjct 586 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 645 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGT 126221 || |||||||| |||||||| | |||||||| | |||| || || | || Sbjct 646 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 704 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 705 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 762 >seq357 Length=28555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 || |||||||| | ||||| || || || | || || || ||||| ||||||||| Sbjct 15338 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 15279 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 15278 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 15219 Query 172883 TCCGTCACGATGAGCGTACACT 172904 || |||| || |||| |||| Sbjct 15218 TCAGTCAAAATCAGCGAGCACT 15197 >seq278 Length=32862 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 ||||||| || ||||| || ||||||||||||||||||| || | | || || || Sbjct 22973 AACCTGTTCCGATACCATCACTGCCGTTCACGAGAACCATCGGGATGATCGGGATGTACC 23032 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | || ||||| || | | ||||| ||||||||||| || ||||| || |||| || Sbjct 23033 ATTCGGGTTCGATAGACTGGCCATCTTCATCCAAATACTTCAGCACATCGTTGTCCAGCG 23092 Query 171846 GATCAAAGAT 171855 |||| |||| Sbjct 23093 GATCGTAGAT 23102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597319162564960