Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq329 104 2e-17 seq223 100 2e-16 >seq329 Length=29691 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| |||||||| || Sbjct 17942 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGACCGC 18001 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| || | | || |||| ||| ||||| |||| |||||| || | | Sbjct 18002 CGACCCGCACAACTCCGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAA 18061 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || |||||| Sbjct 18062 GAAGGACCCCAAGGTGGTCAAGGCCGG 18088 >seq223 Length=38204 Score = 100 bits (110), Expect = 2e-16 Identities = 181/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || | ||| | ||| | |||||| Sbjct 18801 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTCTGGTCGCACCGCGGCTACAA 18742 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || || Sbjct 18741 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGTAC 18682 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| | ||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 18681 CATCTTCGATTGGTCGCGCGACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGA 18622 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 18621 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGCAA 18562 Query 108576 GGACCCCGACGTGATCTCGGCCGGT 108600 | || ||||| | |||||||| Sbjct 18561 GCACAAGAACGTGCGCGCGGCCGGT 18537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381751341028128