Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq191 244 1e-59 seq19 165 1e-35 seq357 98.7 1e-15 >seq191 Length=41755 Score = 244 bits (270), Expect = 1e-59 Identities = 1120/1752 (64%), Gaps = 72/1752 (4%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 19218 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 19277 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || || | ||| | ||||| ||| || ||| || || Sbjct 19278 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 19337 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||||||| || || | ||| ||||| |||||| |||||||| || |||| Sbjct 19338 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 19397 Query 115743 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799 | ||| | | || || || | ||| || || | |||||||| | | Sbjct 19398 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 19454 Query 115800 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 || | | || || | ||||| || | || | || |||| || ||||| Sbjct 19455 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 19514 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || | |||||||| || || ||| | || ||||| | |||||| Sbjct 19515 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 19574 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 19575 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 19634 Query 115980 CATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC 116039 || ||| || |||||||| || | | | | |||||||| || |||| || Sbjct 19635 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 19694 Query 116040 GTAGTTGAGCTTTGTC----TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | | | | | | ||||||| || ||||||| |||||| | | | Sbjct 19695 CCACAAGCCCGAAGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTGCTGG 19753 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC- 116154 | |||||||||| || ||||| || |||||| | |||| | || | || || Sbjct 19754 CAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTCCA 19804 Query 116155 TCGAGGGCT--------GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT 116204 |||||| || |||| || || ||||| || ||| ||||| || || Sbjct 19805 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTT 19858 Query 116205 ---GGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 || || | || || ||||| | | || | |||||| ||||||||||||| Sbjct 19859 CACGGGCTTGCGGGCTCTCGAACGC-ATAGTTCATGAGGATAAATGCATCCGCGAGACCC 19917 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 ||||| || | |||| ||||| || | ||| || ||||| || || ||||||||| Sbjct 19918 TGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGG 19977 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || || || ||| | || | || ||| || ||||| || | || | Sbjct 19978 TAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTAC 20037 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | ||| | || | || | || | ||| |||| || ||||| | ||| Sbjct 20038 AGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGAC 20091 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 ||||| || ||||| | |||||| |||||||| ||||| || ||||| Sbjct 20092 GCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG 20151 Query 116500 TTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 || ||| || ||||| | ||||| || || ||||| ||| ||| ||| Sbjct 20152 TTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCC 20208 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||| ||||| | ||| |||||||| | || | | || || || ||| || Sbjct 20209 TTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CA 20266 Query 116617 TCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 | || | |||| | | | ||| || |||||||||| ||||||||| ||| || Sbjct 20267 GCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAG 20324 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 | ||| ||||| || ||| |||| ||| |||| || || |||| || || ||||| | Sbjct 20325 AGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAA 20383 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | || | | || || ||||||||||| || || |||| ||| || || Sbjct 20384 GGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGT 20443 Query 116792 AGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 ||||||| || || || | || | || | || || || |||| ||||| || Sbjct 20444 AGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAAC 20502 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || ||||||||||| |||||||| | |||| || || ||||| | Sbjct 20503 TCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCT 20562 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| | || || || | ||||| || ||||| || Sbjct 20563 CCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCG 20622 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | ||| || || || || || || || |||| | || | ||| ||| Sbjct 20623 TTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTA 20682 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 || |||||||| || |||||||| ||||| ||||||| | |||| || |||| || Sbjct 20683 ATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATG 20742 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || |||||||| ||| | || | ||||| || ||||| || || | || Sbjct 20743 CCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGC 20802 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || ||||| ||||| || || |||||||| | || | || | || ||||| || Sbjct 20803 GTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTC 20861 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 || || | || | | | ||||||| | ||||||||| | | || ||||| | Sbjct 20862 ATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGAT 20921 Query 117267 CATGTATTGGGG 117278 ||| | ||||| Sbjct 20922 CATCTGCTGGGG 20933 >seq19 Length=94326 Score = 165 bits (182), Expect = 1e-35 Identities = 367/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 230 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 289 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 || | ||||| | || || |||||||| ||| | | ||| ||| |||| | Sbjct 290 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCA-CCCAGTGA 348 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 | | || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 349 G-TACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 407 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 |||| || | ||||||| ||| | |||| | | |||||| ||||||| || | Sbjct 408 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 467 Query 127458 GTACGATGGCGTG-AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGA-GTTC 127515 | ||||| ||||| | | || | ||| | | || || || | | | | Sbjct 468 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 526 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| || || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 527 CAC-GCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 585 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||| |||||||| || |||||||| | |||||| || | || || || || |||||||| Sbjct 586 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 645 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTAT 127694 || |||||||| |||||||| | |||||||| | |||| || || | | Sbjct 646 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 704 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||| | |||||| | ||||| ||||| | || |||| |||| ||| || Sbjct 705 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 762 >seq357 Length=28555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 || |||||||| | || || || || || | || ||||| ||||| ||||||||| Sbjct 15338 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 15279 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 15278 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 15219 Query 176903 TCCGTCACGATGAGCGTACACT 176924 || |||| || |||| |||| Sbjct 15218 TCAGTCAAAATCAGCGAGCACT 15197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613471831309920