Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 311 9e-80 seq47 159 3e-34 seq1068 118 1e-21 seq39 95.1 1e-14 >seq19 Length=94326 Score = 311 bits (344), Expect = 9e-80 Identities = 552/795 (69%), Gaps = 10/795 (1%) Strand=Plus/Plus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||||||||||||||||||||| || ||||| | | || | || | | Sbjct 353 AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATC 412 Query 132781 AGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || ||| || |||| ||| | | ||| ||| |||| || | || ||||| || Sbjct 413 AGCTCCACGGGGAGCGAGTCGCTCACGAACTCGT-GCTCAATCACCACAGCGTCACGCAC 471 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTG--CACCAAATGCTTGAACATCAAGCA 132896 ||| | | | |||| | | | |||| | ||| |||||| | | | |||| | ||| Sbjct 472 GAT--CGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGAGGCA 528 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 || ||||| |||| ||||||||||| | ||||| ||||| ||| ||| || Sbjct 529 CGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACC 588 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||||||||| || |||||||| || |||| | ||| ||||| ||||| | Sbjct 589 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAAT 648 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 |||||| ||||| ||||| |||| ||| ||||| | | | | | | | Sbjct 649 GCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA 708 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| |||||||| |||||| | | |||||||| ||||| |||||||| || Sbjct 709 CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAG 768 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 ||| | ||||| | | | | ||| |||||||| || ||| |||| || Sbjct 769 CAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTC 828 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 |||||| | |||||| |||||||| || |||||||| ||||| || ||||| ||| || Sbjct 829 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTG 888 Query 133257 CACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 ||| || | ||| | ||| |||| || ||||| ||||||||||||||||| |||| Sbjct 889 CACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 947 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGC 133375 | || || ||||||||||||||||| |||||||||||||| ||| | | ||||||| Sbjct 948 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAGTCCT 1007 Query 133376 GCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGT 133435 | ||| | |||||||| ||||||| | ||||| ||||||||||| || || |||| Sbjct 1008 TCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGT 1067 Query 133436 ACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGC 133495 |||| ||||| ||| | || || || || | ||| |||||| ||||| || Sbjct 1068 ACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTTCTCCA 1127 Query 133496 GCAACAGCGGCTCCG 133510 || | |||||||| Sbjct 1128 CCAGGAACGGCTCCG 1142 >seq47 Length=71270 Score = 159 bits (176), Expect = 3e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || ||||| || ||| | |||||||| |||||||| | ||||| ||| Sbjct 50410 AAGAACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAG 50469 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | | | |||| | || | ||||||| ||||| ||||| || || | Sbjct 50470 CCTTCGGACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCC 50528 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 |||||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||| Sbjct 50529 CGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGA 50588 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| ||||| | |||||||| |||||||||||| || | || ||| Sbjct 50589 CTACAACATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 50643 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| |||||||| | ||||| ||| | | Sbjct 50644 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 50703 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | || | ||||||| ||||| ||||| || || ||||||| Sbjct 50704 GACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 50762 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 50763 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 50822 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||||||||||| | | ||||| Sbjct 50823 CATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGG 50870 >seq1068 Length=8813 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 3586 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 3645 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| || || ||||| | ||||| Sbjct 3646 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 3705 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 3706 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 3765 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 3766 ATCCAGAAGG 3775 >seq39 Length=75733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 36159 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 36100 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || || ||||||||||| || ||||| ||| |||||||| ||||||||||| || | Sbjct 36099 ACTCTTTCGGACTACAACATTCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGTCTGCG 36041 Query 38465 AGGCGG 38470 || || Sbjct 36040 TGGTGG 36035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500143965038080