Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq191 197 2e-45 seq144 149 7e-31 seq19 105 8e-18 >seq191 Length=41755 Score = 197 bits (218), Expect = 2e-45 Identities = 1153/1818 (63%), Gaps = 68/1818 (4%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| || | || ||| Sbjct 19219 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTG 19278 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 || ||||| | || | ||||| |||||| ||| ||| | ||| Sbjct 19279 CTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCCA 19338 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | ||| || | || ||||| || ||||||||| Sbjct 19339 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 19398 Query 109594 TTCTTGATATCATCGGGAATG---TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 | ||||| | || |||||| | ||| || || | |||||||| | || Sbjct 19399 TCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAGA 19455 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 || | | || ||| || ||||| || | || | || || | | || | | Sbjct 19456 ATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTAC 19515 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 ||||| || | || |||||||| || ||| ||| ||| ||||| | |||||| Sbjct 19516 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 19575 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || |||| ||||||||||||| | || || || || || || |||||||| |||||| Sbjct 19576 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 19635 Query 109831 ATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCA 109890 | ||| || ||| |||| || | | | | || ||| | || ||||||| Sbjct 19636 ACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCC 19695 Query 109891 TAACGACCACTAA-ATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGC 109949 | | | | | || | || | || |||||| || || | | ||||| Sbjct 19696 CA-CAAGCCCGAAGACGGGGTGACGCC---CCACATGTCGAACTGGAAGATACCCTTGCT 19751 Query 109950 AGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC 110009 ||||| || |||| ||| ||||||||| ||| ||| ||| | ||| || | Sbjct 19752 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGAGGT 19811 Query 110010 CTCTAGTGCCGCATGATACATAGTCTCAAAAAT----ATGAGCA-TTCATGAG---GCGA 110061 ||| | | || | || || ||||| || || ||| | |||| | | ||| Sbjct 19812 CTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG 19871 Query 110062 GACTCTTCACAGTCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 | |||| |||| | | || || | || |||| ||||||| |||||||| || Sbjct 19872 G-CTCT-------CGAACGCATAGTTCATGAGGA-TAAATGCATCCGCGAGACCCTGGAC 19922 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 || | ||||| ||||| || |||||| || || || || |||||||| | Sbjct 19923 GCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTA 19982 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 |||| ||| |||||| || | ||| ||||| ||| || | || | || || Sbjct 19983 GTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTT 20042 Query 110241 GTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAG 110300 | ||| | |||| | |||| ||| | |||||||| || | |||||| || Sbjct 20043 CTGGTAGTTGAACACTCCATCCTCC------ACAAACTTGGGGAGGGCCACAGACGCCAG 20096 Query 110301 ATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTG 110358 |||||||| | ||| || | || ||||| |||| ||| || ||||||||| Sbjct 20097 GTTGCACACCGCCACCTCATCG--GGCGACGTGTACTCCATAATCTCGCAGCACAAGTTG 20154 Query 110359 ---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415 || | | || || | ||||| ||| ||||| ||| |||| || ||||| Sbjct 20155 CTCGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 20211 Query 110416 TAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCG 110475 || |||||| | || || || || |||| | | || ||||| ||| || | Sbjct 20212 TACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCT 20269 Query 110476 GC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA-AGT 110530 || ||| || || |||| ||| | || |||| ||||||||| ||||| ||| Sbjct 20270 GCTGGGCATTGATCGTCTTGCGC--GCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGT 20327 Query 110531 CCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 | || || || | || | ||| || | || || |||| | ||| ||||| ||| Sbjct 20328 C-TCGAACTCGTCGCCCCAGCAC-TCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGG 20385 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||| || || | | || || | |||||||||||| || || | ||||| || || Sbjct 20386 CTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAG 20445 Query 110650 AAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 || ||||| || || | || || | | || ||||| ||| ||||||| || || Sbjct 20446 AAGAGGTCGCGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTC 20504 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA---CGACC 110765 | | || | |||||| || || || |||| |||| || || || || | || Sbjct 20505 GAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCC 20564 Query 110766 CGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 |||||| |||||||| || ||| ||||||||||||| ||||| || || || || | Sbjct 20565 TCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTT 20624 Query 110826 GGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCAT 110885 |||| || || || || | || | || |||| || |||| ||| || || Sbjct 20625 GGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAAT 20684 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 |||||||| || |||||||| || || |||| |||| || | ||||| || Sbjct 20685 GCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCC 20744 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 |||||||| || ||| |||| | || || || || |||| ||| ||||| ||||| Sbjct 20745 CTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGT 20804 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGT 111064 || || || ||||| || || ||||| || | || | || | || ||||| | | Sbjct 20805 GCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCAT 20863 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | |||| ||||| | | | |||| ||||||||| | || || ||||||| || Sbjct 20864 ACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCA 20923 Query 111125 TATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGA--AGGTAACTCTTCTCTAG 111182 | | || || || | | |||||| | ||||| || ||||| | | ||| || Sbjct 20924 TCTGCTGGGGGCGCTCCACGACCTTTCCGT--TCACGCGGAAGAGGTAGCCCCGCTCGAG 20981 Query 111183 GGTCTTGAGACCAAAGTA 111200 ||||||| || ||||| Sbjct 20982 CGTCTTGAAGCCGAAGTA 20999 >seq144 Length=49399 Score = 149 bits (164), Expect = 7e-31 Identities = 326/482 (68%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 45157 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 45098 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 45097 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCCACCAGC 45041 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||||| ||| | ||||||||| || ||| | | | | |||| ||||| Sbjct 45040 AGCTGGTTGAGCGTGTTTTCACGCTCGTCATTGCCGC-CGGAGAAGTTGCCCTT-GCTTC 44983 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||||||||| || || || || ||| || || | Sbjct 44982 GTGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 44923 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || |||||||||||| | || ||||| |||||||| || | ||||| Sbjct 44922 CCTCCTTGAACAGGTCACGTACACGCGAGGGACCCACACCAACGAACATTTCGATGAAGT 44863 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 || |||| | ||||| ||| || || | | ||| ||||| |||| || || Sbjct 44862 CTGAACCAGAGATGCTGAA-GAACGGCACGCTGGCCTCGCCAGCCGTGGCCTTCGCCAGC 44804 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | || || |||||||| || | ||| |||| || ||||| ||||||||| || ||| Sbjct 44803 AACGTTTTGCCCGTACCGGGCGGGCCAACGAGCAGCGCGCCCTTGGGGATCTTCGCTCCA 44744 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | ||||| ||| Sbjct 44743 AGCTCCGTGAAGCGCTTTTGGTTGCGAAGGAAGTCCACGAACTCCATGATTTCCTTCTTT 44684 Query 11968 GC 11969 || Sbjct 44683 GC 44682 >seq19 Length=94326 Score = 105 bits (116), Expect = 8e-18 Identities = 349/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 242 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 301 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG-ACCAACTTGTTTCAGAAGACG 119326 |||| || || || || ||| |||| ||| || ||| | | | ||| || || Sbjct 302 CAGTCGAACGGGTTCTTCACGTTGTAGATCT-TGGATGCACCCAGTGAGTACAGCAGGCG 360 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| || | | |||| | || ||||| || || || | || Sbjct 361 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTC-CA 419 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || | ||| | ||| | | ||| ||| ||||||| || |||||| | || Sbjct 420 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 479 Query 119446 GAATA-GTTTCTGTCGATGGTTTGTTTCTCAA----GAGTTTAAACAACTCTACGGCAAA 119500 | | | ||| || | ||||| ||| |||| | | | | ||| || Sbjct 480 GCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGT--ACATGAGGC-ACGCGAAG 535 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | | || | ||||| | ||||| ||||||||| || ||||| || |||||||| Sbjct 536 TCCGTGTGCATGCCCT-CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 594 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| ||||||| || || || || ||||| |||||||| Sbjct 595 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 654 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACT 119676 ||| |||||| || | |||||||| | ||| ||| || ||| |||||| Sbjct 655 CACGGCGGCGAACGCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACT 713 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||| |||||| |||||| ||| | ||| |||| || | |||||| Sbjct 714 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588942045533600