Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq191 345 8e-90 seq19 255 1e-62 >seq191 Length=41755 Score = 345 bits (382), Expect = 8e-90 Identities = 1036/1577 (66%), Gaps = 64/1577 (4%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | ||||| | | | ||| | ||| || ||||| || Sbjct 19518 GTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGG 19577 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||||| ||| ||||| |||| |||||| || || || |||||||| |||||||| Sbjct 19578 CTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCAC 19637 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGCCGA-AGCTCTGCCCAGTC 213085 ||||| ||| | | ||||||| | || | | | || ||| | ||||| || Sbjct 19638 GAGGAGCGAGTTGCGGATGCCGTGCTTG---ATCACGTTCTCCTTGAGCGCAGCCCAATC 19694 Query 213086 CCATCTGCC---AGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 ||| ||| |||| || | ||| ||||||||| ||||| ||||| || Sbjct 19695 CCACAAGCCCGAAGACGGGG---------TGACGCCCCACATGTCGAACTGGAAGATACC 19745 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 ||||| | || |||||| | | ||| ||||| |||||||||| | ||| Sbjct 19746 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCAT 19805 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || | || || | |||||||||||| || || || || | | ||||||| | ||| Sbjct 19806 CGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGC 19865 Query 213263 CTCTGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | ||| | ||| | ||| | |||| | || |||| || || |||||||| | Sbjct 19866 TTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGC 19924 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 | || || | || | ||| | || ||| |||||| | || |||||||| |||||| || Sbjct 19925 CAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTCCTCCACGGGGTAGTAG 19983 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| ||| |||| |||||| | ||| ||||| |||| ||||| || | | ||| | | Sbjct 19984 TTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTC 20043 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | || |||||||| || |||| |||||||| || ||||| | |||||| Sbjct 20044 TGGTAGTTGAACACT------CCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGG 20097 Query 213501 TTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 ||||| || |||||||| | | | | | ||||||||||| |||||| ||||| |||||| Sbjct 20098 TTGCACACCGCCACCTCATCGGGCGAC-GTGTACTCCATAATCTCGCAGCACAAGTTGCT 20156 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 | ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||| || Sbjct 20157 CGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAG 20216 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 |||| | || || ||||| | ||| | |||| || | ||| || | | ||| Sbjct 20217 CATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGC 20276 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 |||| | | | | || || | | |||||||| ||||| || | ||| Sbjct 20277 ATTGATCGTCTTGC-GCGCGCGCCCCTCCT--TCTCGTACTTCTCGTACAGAGTCTCGAA 20333 Query 213740 TTCGTGGCCCCAGACCCTGTCCAGTCC-CGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 |||| ||||||| | || ||||| || | || ||| || | |||||||| | Sbjct 20334 CTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCAT-TGGGGCAGAAAAGGCTCCACT 20392 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||| || || | || ||||||||| || ||||||||||| ||| ||| |||| Sbjct 20393 TGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGT 20452 Query 213859 CCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 | | | | | ||||| || ||| |||||||| || || || || || | Sbjct 20453 CGCGCGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACA 20509 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCT 213972 ||| |||||||||||||||| ||||||||| || | ||| | |||| || |||| Sbjct 20510 CGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCT 20569 Query 213973 GGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 ||||||| | |||| ||||||| | ||| | ||| | | ||||||||| Sbjct 20570 GGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATG 20629 Query 214033 GTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTA 214092 |||||| || || || || | | ||| | | |||| |||| | || | Sbjct 20630 ATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCCAA 20689 Query 214093 TGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCA 214152 | || ||||| |||||||||| ||||| || | | || || ||||| | | Sbjct 20690 TACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAA 20749 Query 214153 TGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAG 214212 | ||| || | | ||||| ||| || ||| ||||| || | | || ||| | Sbjct 20750 TCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGG 20809 Query 214213 AGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCT 214272 ||| || |||||||| | || || | | ||| | | || | |||| || || | Sbjct 20810 CGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGTGT 20869 Query 214273 CCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGC 214331 ||| | | ||||||| |||||||| || || || ||| | ||| | ||| ||| Sbjct 20870 GCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGC-CACGCGCATGATCATCTGC 20928 Query 214332 TGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGA 214385 ||||| | ||| | | ||||| || || || |||||| ||||| || Sbjct 20929 TGGGGGCGCTCCA--CGACCTTT----CCGTTCACGCGGAAGAGGTAGCCCCGCTCGAGC 20982 Query 214386 GTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CGTGTATGAGGGCAGCGTCC 214442 |||||||| || |||||| ||| | | || || |||| |||| ||| | || Sbjct 20983 GTCTTGAAGCCGAAGTAGTCGTA---CTCAAAGTCCCGGTCGTGGATGATGGCCGAGTTA 21039 Query 214443 AGCTCTTCCGCGTGCTC 214459 ||||| ||| |||||| Sbjct 21040 AGCTCGTCCTTGTGCTC 21056 >seq19 Length=94326 Score = 255 bits (282), Expect = 1e-62 Identities = 562/838 (67%), Gaps = 11/838 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 241 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCAT 300 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | |||| | ||||||| | Sbjct 301 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCG 360 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| | ||||||||| || || ||| Sbjct 361 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCAC 420 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||| | | | | | ||||| | ||| ||| ||| || || | ||| ||| | Sbjct 421 GGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTG 480 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| || ||| | || | | ||| || ||||| Sbjct 481 CACGCGGCTCTCCGGCAGCTTGTTCACCAA---CTTCGAGTACATGAGGCACGCGAAGTC 537 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 538 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 597 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| || || |||||||| ||||||||||| Sbjct 598 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCAC 657 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | | | | | ||| | Sbjct 658 GGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA-CCACTTGA 716 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAGCT 48377 |||||||| |||||||||| | ||| || |||||||| ||||| | | ||| | | Sbjct 717 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGAT 776 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 ||| ||| | |||||| | || || || |||| | ||||| ||| |||| Sbjct 777 CCTT---CTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGT 833 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||| | ||||| ||| ||||| | Sbjct 834 GGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCT 893 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || ||| || | ||| ||||| || || || || || ||||| ||||| | Sbjct 894 CATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATG 953 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 | || || || || | ||| ||||||||||||| || || |||| ||| | || Sbjct 954 CTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAGTCCTTCAGGT 1013 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | | ||||||||| || || | |||||||| ||||| || || |||||||| Sbjct 1014 CGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACAT 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931479097134080