Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq748 143 1e-29 >seq748 Length=14069 Score = 143 bits (158), Expect = 1e-29 Identities = 331/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 65222 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65281 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 6573 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 6514 Query 65282 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 65341 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 6513 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 6454 Query 65342 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65401 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 6453 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 6394 Query 65402 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65461 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 6393 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 6334 Query 65462 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 65518 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 6333 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 6276 Query 65519 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 65578 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| | Sbjct 6275 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 6220 Query 65579 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65638 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 6219 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 6160 Query 65639 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 65698 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 6159 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 6100 Query 65699 AACAAGCTGGCCCCGCC 65715 ||||||||||| |||| Sbjct 6099 AACAAGCTGGCGTCGCC 6083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242216784532004