Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq191 125 6e-24 seq47 113 4e-20 seq1068 91.5 1e-13 >seq191 Length=41755 Score = 125 bits (138), Expect = 6e-24 Identities = 323/482 (67%), Gaps = 19/482 (4%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||||||||| | || ||| ||||||||||||| || | ||||| |||| | | | || Sbjct 20394 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 20453 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 |||||| | | || || || || | | | || | ||||| || || ||| Sbjct 20454 GCGCGCGCGGTGCAGCT--CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACG 20511 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGA 139563 ||||||||||| || ||||| |||||||| | | |||||| || ||||| ||| || Sbjct 20512 TCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGG 20571 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || || | || | | | |||||| || | || ||| || | ||| | | || | Sbjct 20572 TCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGAT 20631 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACAT--TGATGCCGA 139681 ||||| |||| |||||| ||||| || |||| || ||| ||| | ||||| | Sbjct 20632 CCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT--TGTGCATGCTAATGCCAA 20689 Query 139682 TTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTT 139740 | || ||| | | ||||| || | |||| | || | | || ||||| || || Sbjct 20690 TACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAAATGCCCTCA 20748 Query 139741 ATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCG 139800 || |||||||||||| | | ||| || || ||||| || ||||| | ||||||| Sbjct 20749 ATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCG 20808 Query 139801 GCTGCAAACAGAGTAGGACTCGCGTGCGT---GAACATTTGTTTCGACATCAATTCGTAC 139857 || ||| || || || |||||||||| |||||| ||| ||||| | || ||| Sbjct 20809 GCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT---GACATGAGCTCATAC 20865 Query 139858 GT 139859 || Sbjct 20866 GT 20867 >seq47 Length=71270 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 50644 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 50703 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 50704 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 50763 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 50764 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 50823 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || ||||| ||||||||| |||| | ||||| || Sbjct 50824 ATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGG 50870 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 50416 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 50475 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 50476 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 50535 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 50536 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 50595 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| |||| || ||| Sbjct 50596 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 50643 >seq1068 Length=8813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || ||||| | || Sbjct 3586 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 3645 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 3646 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 3705 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 3706 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 3740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449871663403360