Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04]
4,612 sequences; 39,213,553 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq47 109 5e-19
seq1068 100 2e-16
>seq47
Length=71270
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || || ||| || || || |||| ||
Sbjct 50625 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 50566
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||||| || | || ||| |||||
Sbjct 50565 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 50506
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||||||||| || | ||| | | | | || | ||||||||||| |||||| | |
Sbjct 50505 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 50447
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| ||||||| ||| || || ||||| ||||| ||
Sbjct 50446 TGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 50413
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || ||| || || || |||| ||
Sbjct 50853 CACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 50794
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||||| || | || ||| |||||
Sbjct 50793 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 50734
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||||||||| || | ||| | | | | || | ||||||||||| |||||| | |
Sbjct 50733 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 50675
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||||| ||| || || ||||| |||||
Sbjct 50674 TGCCCGTCAACGTCTTCACGAAGATCTGCAT 50644
>seq1068
Length=8813
Score = 100 bits (110), Expect = 2e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || || | || || || |||| || ||||| ||||| || || ||
Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
|| ||||||||||| | || | || || |||||| ||||||||| |||| | | | |
Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 3655
Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275
| | | ||| || ||| ||||||| |||||| | || |||||||| || || |||||
Sbjct 3654 AATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 3595
Query 39276 GATTTGCAT 39284
||| |||||
Sbjct 3594 GATCTGCAT 3586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429521455778756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |