Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1068 120 7e-22 seq47 120 7e-22 >seq1068 Length=8813 Score = 120 bits (132), Expect = 7e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || || |||||||| || || ||||| || |||||| | || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || |||||| || || || || || |||||||| || |||||||| ||| Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 3593 ATCTGCATGATTCCCT 3578 >seq47 Length=71270 Score = 120 bits (132), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| ||| | || | || || || | Sbjct 50622 CAAG-TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCA 50564 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | ||||||||| | || ||| || ||||| ||||| | Sbjct 50563 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGA 50504 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || || | || | | ||| ||| ||| || || || || || || |||| Sbjct 50503 TTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGC 50444 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| | ||||||||||||| |||||| || Sbjct 50443 CCGTCAACGTCTTCACGAAGATCTGCATGTT 50413 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| ||| | || | || || || | Sbjct 50850 CAAG-TGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCA 50792 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | ||||||||| | || ||| || ||||| ||||| | Sbjct 50791 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGA 50732 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || || | || | | ||| ||| ||| || || || || || || |||| Sbjct 50731 TTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGC 50672 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||||||||||| |||||| Sbjct 50671 CCGTCAACGTCTTCACGAAGATCTGCAT 50644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153752619286652