Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq36 150 2e-31 seq174 140 3e-28 seq961 89.7 4e-13 >seq36 Length=76722 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||||||| | ||||||||| || || |||||||| |||||| Sbjct 56855 CCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 56796 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 56795 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 56736 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||||||| ||||| || || || | |||| || ||||| ||| || Sbjct 56735 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 56676 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || ||||| |||| || || || || ||||||||| Sbjct 56675 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56628 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | |||||||| || || |||||||| ||||||| ||||| || Sbjct 56613 CAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 56554 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| ||||||||||| ||||| || |||||||||||||| Sbjct 56553 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 56494 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || || | |||| || ||||| ||| || || | || | || Sbjct 56493 TTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGT 56434 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || || || ||||||||| Sbjct 56433 CTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56400 >seq174 Length=41746 Score = 140 bits (154), Expect = 3e-28 Identities = 314/466 (67%), Gaps = 8/466 (2%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||| ||||| ||||| ||| || Sbjct 19203 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATG---GA 19259 Query 132977 CACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | || | | ||| || || ||||| | | |||||||| || ||||| || Sbjct 19260 CGTCAGCTTGCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAAT 19319 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | ||||||| || | || || | | ||| ||||||||||| |||| Sbjct 19320 GTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGT 19379 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| || | || || | | ||||||||||| || || Sbjct 19380 CTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTC 19439 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 |||| ||||| |||||||| || || || | ||| | || ||||| ||| | || | Sbjct 19440 AGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCAT 19499 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 ||| |||| ||| || | | || ||||| || || || ||||| | | || | |||| Sbjct 19500 GAGGTACTTGTTCACGATCGTG-AACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCG 19558 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||| |||| |||| || ||||||||||| | ||||| ||||||| ||| ||||||| Sbjct 19559 ACGTGTACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCA 19618 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTT 133378 | ||||| | | ||||| | | ||||| |||| | | ||| Sbjct 19619 TCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTT 19664 >seq961 Length=10404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 6632 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6691 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || ||||| |||||||| ||||| || || || | || Sbjct 6692 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 6751 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 6752 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6811 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 6812 ATCTGCATG 6820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433798892931628