Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq1747 120 2e-22 seq2784 91.5 1e-13 >seq1747 Length=4394 Score = 120 bits (132), Expect = 2e-22 Identities = 140/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 99378 CGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGC 99437 ||||||||| ||| |||||| || |||||||| |||||||| ||||| ||||| ||||| Sbjct 1 CGAGGGCACATTGGCCTTGATCAGACCCGTCACGACATCCACCGAGGGGCGCTGGGTCGC 60 Query 99438 CAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTC 99497 ||| || || || |||||| ||||||||| ||| | |||||| || || |||| Sbjct 61 CAGCACCAGGTGGATGCCGCTGGCACGCGCCAGCTGGGTGATGCGCACGATCGAATCCTC 120 Query 99498 AACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGAT 99557 || || | | || ||| ||||||||||| ||||| ||||| || || || | | Sbjct 121 GACGTCG--CGGGGCGCGACC-ATCATGAGATCTGCGAGCTCATCGACGACGACGAGCAG 177 Query 99558 GTAGGGG 99564 ||||||| Sbjct 178 GTAGGGG 184 Score = 86.0 bits (94), Expect = 4e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 99792 CATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGG 99851 ||| ||||||| |||||| ||||||||||| ||||| | || ||||||||||| || || Sbjct 472 CATCGAGTTGACGAAGCTCGACTTGCCCGACCCGGTGGAACCGGCCACCAGCAGGTGGGG 531 Query 99852 CATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCACGGT 99911 |||||| || |||||| || || ||| |||| |||||||| || | | ||| Sbjct 532 CATCTTCGCGAGGTTCGCCACGACGTAGCCGCCACCGACATCCTTGCCGACACCGATGGT 591 Query 99912 CAACGGATGG 99921 || || ||| Sbjct 592 CATGGGGTGG 601 >seq2784 Length=2382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 99216 CTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGC-GCCCCCA 99274 ||||||||| | ||| ||| |||||||||| | |||||||| || || | |||| Sbjct 184 CTCGATCTCGGCCTCGCTGACCCACGCGCCCTGCACGCGGATGGC-CTTCGAAGTGCCCA 126 Query 99275 CTGGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGA 99334 ||||| || | ||||| ||| || ||||| | ||||| ||| || ||| |||| Sbjct 125 TCGGCAGGAACAGTCCGTCTCCCTGCCCGATGAGCCGGTCGGCACCGGGCTGGTCGAGGA 66 Query 99335 TCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCT 99394 | || ||| |||||||| | || |||||||| |||||||||||||| || || Sbjct 65 TGACGCGGGAATCGGTGACGCTCGTGACGGCGAACGCGAGCCGCGAGGGCACAATGGCCT 6 Query 99395 TGAT 99398 |||| Sbjct 5 TGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354617443926774