Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq400 125 6e-24 >seq400 Length=24864 Score = 125 bits (138), Expect = 6e-24 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || |||||| ||||| ||||| ||||| | |||| || || | ||||||| Sbjct 7733 ACACCCGTGCTGCCGAAGCCGCCGGCGCCGCGCGCCGTGTCCTCGATCTCATCCACCTCC 7792 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | ||| || ||| || | |||| || |||||||| | ||||| || ||| Sbjct 7793 TGCACCTCTGGGTACTCGATCTTCTCGAGAATAAGCTGCGCCACGCGGTCCCCGCGCTTA 7852 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||| ||| || | | |||| | |||||||| | ||||||||||||||||||||||| Sbjct 7853 ACCGAGAAGTCTTCG--GCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGT 7910 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| ||||| || ||||| ||||||||| | ||| | || || || || || | Sbjct 7911 CGGCGTCGATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGCCCAGAACGCG 7970 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | ||||| || |||| || ||| |||||| Sbjct 7971 GCGCCACACGCGCGTAACATCCAGCGGGAA 8000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430023167164808