Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq36 113 4e-20 seq678 107 2e-18 seq257 104 2e-17 seq961 89.7 5e-13 >seq36 Length=76722 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||||| ||||| || | ||| || ||||||| ||| Sbjct 56843 CGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 56784 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 56783 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 56724 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| | ||| | | || ||||| | ||||||| Sbjct 56723 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 56664 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || ||||| ||||||||||||| Sbjct 56663 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGC 56627 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||||| ||||| || | ||| || ||||||| ||| Sbjct 56615 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 56556 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 56555 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 56496 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| | ||| | | || ||||| | ||||||| Sbjct 56495 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 56436 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || | || ||||| |||||||||||| Sbjct 56435 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56400 >seq678 Length=15758 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||||||||| || | ||| || ||||||| ||| | Sbjct 15092 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15151 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | | ||||| || || || || ||||| ||| Sbjct 15152 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15211 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||| ||| | ||| | ||| | | || ||||| | ||||| Sbjct 15212 TCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATC 15271 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | ||| ||||||||||||||||||| Sbjct 15272 GTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATGC 15308 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || ||||||| ||| | Sbjct 15320 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15379 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | | ||||| || || || || ||||| ||| Sbjct 15380 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15439 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||| ||| | ||| | ||| | | || ||||| | ||||| Sbjct 15440 TCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATC 15499 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | ||| ||||| ||||||||||||| Sbjct 15500 GTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATGC 15536 >seq257 Length=32862 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || ||||||| ||| | Sbjct 129 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 188 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | | ||||| || || || || ||||| ||| Sbjct 189 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 248 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||| ||| | ||| | ||| | | || ||||| | ||||| Sbjct 249 TCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATC 308 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | ||| ||||||||||||||||||| Sbjct 309 GTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATGC 345 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||||||||| || | ||| || ||||||| ||| | Sbjct 357 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 416 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | | ||||| || || || || ||||| ||| Sbjct 417 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 476 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||| ||| | ||| | ||| | | || ||||| | ||||| Sbjct 477 TCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATC 536 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| ||||| ||||||||||| Sbjct 537 GTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 571 >seq961 Length=10404 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || ||||| ||||| ||| Sbjct 6665 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTG 6724 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || ||||| | ||||||| Sbjct 6725 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATG 6784 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || |||||||||||||||||| || Sbjct 6785 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGATT 6823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257807909240