Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq174 266 8e-66 seq433 143 7e-29 >seq174 Length=41746 Score = 266 bits (294), Expect = 8e-66 Identities = 630/947 (67%), Gaps = 6/947 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 20831 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 20772 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 20771 TGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 20712 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 20711 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCC 20652 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 20651 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 20592 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 20591 GTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTC 20532 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || || || | || ||||| || ||||| || || ||| Sbjct 20531 GCCATCTACCTGGAGCCGTGGCACGCTGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 20472 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || || ||||| || || ||||| | || | Sbjct 20471 CACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTG 20412 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | | | || ||| || || ||||| | || | Sbjct 20411 TTCATGAAGCGTGTGGAAGC--GAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 20354 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||| ||||| | | |||| ||||| ||||| || || Sbjct 20353 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGG 20294 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 |||| || || ||||| || || ||| |||| ||||| |||||| |||| ||| Sbjct 20293 AGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 20234 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || || |||||||||||| |||| Sbjct 20233 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 20174 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| |||| || || || | ||||||| | || ||||||||| || ||||| Sbjct 20173 AGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGT 20114 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 | ||||| ||| || || || ||||| ||||| | || || || |||||| | | Sbjct 20113 CGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGG 20054 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 |||| || || ||||| | || || || || ||| | | || | || | Sbjct 20053 ATGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGA 19994 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| || ||| || || || || | | || || || || || ||||| Sbjct 19993 ACAAGGTCATTGACGTCAACTACTA-CCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGC 19935 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||| ||||| |||| || ||||| ||||| || | ||||| Sbjct 19934 CACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTAT 19888 >seq433 Length=23307 Score = 143 bits (158), Expect = 7e-29 Identities = 317/470 (67%), Gaps = 4/470 (1%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||| |||||||| || ||||| || || |||||||| ||||| || || Sbjct 1498 CGAAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTA 1557 Query 111542 CAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTG 111600 || |||||||| || | |||||| || || || | || || ||| Sbjct 1558 CACGGACATGCACGCGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAG-GTGATTC 1616 Query 111601 ATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 | ||| | | || ||||| || || || || | || ||| |||||||| | Sbjct 1617 A-CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCT 1675 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGAC 111719 | || | | |||||||| ||||| || || | | ||||| || || || ||| Sbjct 1676 GATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGAC 1735 Query 111720 GGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTT 111779 ||| | | || || || ||||| ||||| || || || || ||||||||||| |||||| Sbjct 1736 GGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTT 1795 Query 111780 AATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCG 111839 || |||||||| ||||| || ||||| | || | || || | || | ||||| Sbjct 1796 AACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCT 1855 Query 111840 GGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTT 111899 |||||||| |||||||||||||| || |||||||| || |||||| |||| | ||| Sbjct 1856 GGTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCTT 1915 Query 111900 AAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 1916 CAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 1965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303254089359938