Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq4983 428 2e-115 seq780 143 1e-29 >seq4983 Length=1217 Score = 428 bits (474), Expect = 2e-115 Identities = 582/807 (72%), Gaps = 15/807 (2%) Strand=Plus/Minus Query 65390 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 65449 || || ||||| |||||||||| ||||| |||||| ||| || ||| |||| ||| Sbjct 863 GTCGAGGTCATCTCCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTT 804 Query 65450 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGT 65509 || | |||||| | | || |||||||| || ||||| || || ||| | || || | Sbjct 803 CCCCGCGGCCGGATCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACT 744 Query 65510 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65569 || || ||| | || || | |||| |||| |||| |||||| | ||||||||| ||| Sbjct 743 CTGCATGCGATCGCGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 684 Query 65570 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65629 ||| | || ||||| || ||||||||| |||||| || ||| ||||| || ||||| Sbjct 683 CACGCGCTCGACCCCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTG 624 Query 65630 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 65689 ||||| ||||| || |||||||| || ||||||| ||| | |||||| || || Sbjct 623 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGA 564 Query 65690 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65749 | | | | |||| ||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 563 GCGATCGACCTCGTGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 504 Query 65750 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65809 || || || || || |||||||| || || || || |||||||||||||| | ||| Sbjct 503 GGTGAGATGGGCGATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGC 444 Query 65810 AAGCTCAC----TGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTT 65865 ||||| || ||| | || ||| || ||||| || | ||| |||||||| | Sbjct 443 AAGCTGACCGGTGGGCTCAAT---CAG-ACGAACACCACGATGATCTTCATCAACCAGCT 388 Query 65866 GCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGC 65925 ||||||||||||||| |||| || ||| | |||||||||| | || || ||||| Sbjct 387 GCGCGAGAAGATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGC 331 Query 65926 TTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGG 65985 ||| ||||||||| || || ||| |||| ||||||| |||| || ||||| || Sbjct 330 GCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGG 271 Query 65986 CGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66045 |||||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||| Sbjct 270 TACCGAGGCTGTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCC 211 Query 66046 GCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAA-- 66103 | | | ||||||||| | || | ||||| | || |||||||| |||| ||| Sbjct 210 GTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGC 153 Query 66104 CTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTAC 66163 ||| |||| | | ||| ||| || | |||||||||||||||||||||| || |||| Sbjct 152 CTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTAC 93 Query 66164 GGGGACAAGAACGTCGCTCAGGGCAAG 66190 | | || | ||| ||||||||| Sbjct 92 GACGGGGAGCAGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 143 bits (158), Expect = 1e-29 Identities = 331/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 65552 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65611 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7507 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7566 Query 65612 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 65671 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7567 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7626 Query 65672 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65731 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 7627 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7686 Query 65732 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65791 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7687 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 7746 Query 65792 ATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 65848 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7747 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7804 Query 65849 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 65908 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| | Sbjct 7805 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7860 Query 65909 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65968 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7861 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7920 Query 65969 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66028 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 7921 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7980 Query 66029 AACAAGCTGGCCCCGCC 66045 ||||||||||| |||| Sbjct 7981 AACAAGCTGGCGTCGCC 7997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238203499139956