Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq433 109 5e-19 >seq433 Length=23307 Score = 109 bits (120), Expect = 5e-19 Identities = 365/561 (65%), Gaps = 29/561 (5%) Strand=Plus/Minus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||||| ||||||||||| || || || | ||||||||| |||| | ||| |||| |||| Sbjct 1809 TAGCTTGCAATGTTAAACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGA 1750 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || | ||| ||||| || || || ||||| || |||| ||| || || || || ||| Sbjct 1749 CACGACAACTCCCCGTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCC 1690 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 ||| || || || |||||||||||| ||| | ||| | | || ||| || Sbjct 1689 ATCTCGTTCAGATCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTC 1630 Query 20456 TT----TTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTC 20511 | | | |||| | | | | ||||| | ||||| || || ||||| Sbjct 1629 GTACGCAGCTTGTGAATC----ACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTC 1574 Query 20512 AGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | | |||| |||| || ||||| || | ||||||||| ||||| |||||||| Sbjct 1573 CGCGTGCATGTCCGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCC 1514 Query 20572 CAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCC 20628 | || || | |||| | ||| || || || | | ||| |||| | ||| || Sbjct 1513 GAGGTCACC--CACTTC-GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCC 1457 Query 20629 ATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAA-----AGCTCCCTGGAGTCAGTACT 20682 ||| |||||| || | | |||| | ||| | || | || | ||| Sbjct 1456 ATTCCCGTCCCAGATGTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTC------ 1403 Query 20683 CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742 || | | ||||| |||||||| | | | ||||| ||||| ||||| ||||| || || Sbjct 1402 GCCGCTAATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGT 1343 Query 20743 TAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAG 20799 || | |||| | || || | |||||| ||| ||| ||||| | || | Sbjct 1342 GAGCAGCGGGAACACGTTCTCTCTCAGACTGAACCGCATCTGTGCTCCAAACACCGACAA 1283 Query 20800 GGTGCCTATGCCGGTGCGGTC 20820 ||||| |||| |||||||| Sbjct 1282 CGTGCCAGTGCCCGTGCGGTC 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441339923243560