Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq3116 1416 0.0 seq2282 244 3e-60 seq2376 165 2e-36 >seq3116 Length=2091 Score = 1416 bits (1570), Expect = 0.0 Identities = 1284/1628 (79%), Gaps = 21/1628 (1%) Strand=Plus/Plus Query 41697 CGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGT 41756 |||||||||||||||||||||| || || || |||| |||||||| ||||||||||| | Sbjct 1 CGAAGTTCAGGCAGTCGGTGACGGCGGTCGGTTCGGCCCCGGTGACGGCGACGTTGCGAT 60 Query 41757 AGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGCCGT 41816 ||||||||||||||||||||| |||||| |||| ||||||||||||||||| || |||| Sbjct 61 AGGCCTCGGCGAGGGCGAGCTTGGCGCCCTCGTAGGGGTCGAGCTGGCAGTAACGTCCGT 120 Query 41817 TCGCGTCGGTCGCGATCGCGAACCCGAGGCCCGACTCCTCATCGACGCGGATCATGCCGG 41876 | |||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| | Sbjct 121 TGCAGTCGGTCGCGATGGCGAACCCGAGACCCGACTGCTCGTCGACGCGGATCATGCCCG 180 Query 41877 CGTCGTCGGGGAAGCTGAGGGCCGTGTTGCCGAGCACGTAGTAGTCGTACTGGTTCGTGA 41936 | ||||||||||| || || |||||||| | |||||||||||||||||||| || | Sbjct 181 CATCGTCGGGGAACGACAGTGCGGTGTTGCCCATGACGTAGTAGTCGTACTGGTTGGTCA 240 Query 41937 TCCACGACGTGTCGGCGAGGTTGGGGGAGCTCACGAGCGCGAGGAACTGCTCACGCAGGA 41996 |||||||| |||||||||||||||| || ||||| |||||||||||||| |||||| Sbjct 241 CCCACGACGGGTCGGCGAGGTTGGGGCTGCCGACGAGGGCGAGGAACTGCTCGCGCAGGC 300 Query 41997 CCGCGGGGTCGTTCGAGCGGGAGAGGAGCTCGGCACTGTCGGCCTGCAGGGCGTCGAGCC 42056 ||| ||||||||| ||||| |||| | |||| ||| || |||| ||||||| || Sbjct 301 TCGCCGGGTCGTTCTGGCGGGGGAGGGCCGCGGCCGAGTCATCCCGCAGCGCGTCGATCC 360 Query 42057 AGGTCGGGTAGGCGACGGGGCGCTCGTAGACCGGGCCGTCGACGGCGACCGTGGACGGGT 42116 | |||||||||||||||||||||||||| ||||| |||||||||||||||||||| || | Sbjct 361 ACGTCGGGTAGGCGACGGGGCGCTCGTACACCGGCCCGTCGACGGCGACCGTGGAGGGAT 420 Query 42117 CCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCGCCGGTGACCT 42176 | |||| |||||| ||| || |||||| ||| |||||||||||||||||||||| Sbjct 421 CGACGTTCACGATCTCCTCGCCGTGCCAGAAGATCTGCAGACGGCCGTCGCCGGTGACCT 480 Query 42177 CGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGTCGAGCT 42236 ||||||| ||| ||||| || |||||||| |||||| || ||||| |||||||||| Sbjct 481 CGCCGAGGACGCTCGTCTCGACATCCCACTTCGTGGTGACCGCCAGGAAGGCGTCGAGCT 540 Query 42237 TCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCTCCTCGG 42296 || | || | |||||| ||||||||||||||||| ||| ||||||||||||||||| Sbjct 541 TCTCGGGGGCGACGATCGCCATCATCCGCTCCTGGCTCTCGCTCATGAGGATCTCCTCGG 600 Query 42297 CCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGCTGTTGC 42356 |||||||| ||| ||||| || ||||| || ||||| |||| |||| || || Sbjct 601 GCGTGAGCGTGGGATCGCGCAGCAGCACCTTCTCGAGGTCGACGCGCATGCCCGACCCGC 660 Query 42357 CGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTGGATCG 42416 |||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||| Sbjct 661 CGTTGGCGGCGAGCTCGCTCGTCGCGCACGAGATGCCGGCGGCCCCGAGGTCTTGGATCG 720 Query 42417 CCTCGACCAGCTCGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCTCGGCGA 42476 ||||||| ||||| ||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 721 CCTCGACGAGCTCACCGCGGTAGAGCTCGAGGCAGCACTCGATGAGTACCTTCTCGGCGA 780 Query 42477 AGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 42536 | |||| | Sbjct 781 ACGGGTCGCCGACCTGCACCGCGGGGCGCTTCGTCGGGCCGGTGGCGTCGAACGAGTCGG 840 Query 42537 AGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACGA 42596 |||||||||| || || |||||||| ||||| || || ||||| || |||| || |||| Sbjct 841 AGGCGAGGATGGATGCTCCGCCGATGCCGTCGCCGCCGGTGCGGGCGCCGAACAGCACGA 900 Query 42597 CCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCCA 42656 |||||||||| ||| | |||||||||||||| || |||||||| ||||| ||||| | Sbjct 901 CCTTGTTGCCCGCGCCGCTGGCGTTGGCGAGCTTCAGATCCTCGTGGCGGAGGACGCCGA 960 Query 42657 CCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGC 42716 | || ||||||||||| || || || |||| |||||| ||||| ||||||||||||| Sbjct 961 CGGCGAGGGCGTTGACGAGGGGGTTCCCCTGGTAGACGCGGTCGAAGACGGTCTCGCCGC 1020 Query 42717 CGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCA 42776 ||||||||||||| || ||||||||| ||||||| |||||||||| |||||||| | Sbjct 1021 CGATGTTCGGCAGTCCCAGGCAGTTGGCGTAGAACGAGATGCCGCTGACCACGCCGTGAA 1080 Query 42777 CGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGA 42836 |||| || || ||||||||||||||| |||||||||||| || ||||||||| |||| Sbjct 1081 CGACGCGGGCGGTGTCGGGGTCGTCGATCGCGCCGAAGCGGAGCTGGTCCATGACGGCGA 1140 Query 42837 CCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGC 42896 | ||||| || ||||| |||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 1141 CGGGGCGCGCCCCCATCGAGATGATGTCGCGGACGATGCCGCCGACACCGGTCGCGGCGC 1200 Query 42897 CCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCC 42956 ||||||||||||||||| | ||||||||||| ||| ||||||| || ||||||| Sbjct 1201 CCTGGAAGGGCTCGATGTAGCTCGGGTGGTTGTGCGACTCGACCTTGAAGGTCACCGCCC 1260 Query 42957 ATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCGCTCGC 43016 | |||||||||| ||||| |||||| |||||||||||||| |||||||||||||||| Sbjct 1261 AGCCCTCGCCGATGTCGACGACGCCGGCGTTCTGCCCCATACCGACCATGAGGCGCTTCT 1320 Query 43017 GCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTAGG 43076 ||||||||| ||||||||| |||||| ||||||| |||| ||||||||||| Sbjct 1321 TCATCTCGTCGCTGACCTTCTGGCCGAACTGGCGCAGGTAGATCTTGGACGACTTGTAGG 1380 Query 43077 AGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCGGC 43136 |||||||||| |||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 1381 AGCAGTGCTCGCTCCACATGACGGAGTACATCGCCAGCTCGCCGCTCGTGGGTCGGCGGC 1440 Query 43137 CGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCCCAGCGCCGCGTAGGGCT 43196 |||||||||| ||| | ||||||||||| ||| ||||||||||| ||||| |||| Sbjct 1441 CGAGGATCTCGCGGATGCGGTCGTACTCGTCGGGCTTCAGGCCCAGCGCGGCGTACGGCT 1500 Query 43197 GCTCCTTCTCCGGAGTCGCGATCGCATTGGCGACCGAGTCGGGAACGTGTTCTGC---GG 43253 |||| ||| || ||||||| |||| |||| || ||| ||||| || Sbjct 1501 GCTCTCGCTCGGGCGTCGCGA------GGGCGTTCGAGACG-----GTG-TCTGCCAGGG 1548 Query 43254 GTGTGCGAGGCGTGGTCACGC--ATG--CTCCTGGAGA-CGAGGGGCGACGGGTCCCGCC 43308 ||| || |||||||||| || |||||||||| || |||||| | || | || Sbjct 1549 AAGTGGAGGGGGTGGTCACGCGGCTGAACTCCTGGAGATCGCGGGGCG-CCGGACGCGAT 1607 Query 43309 CAGTCTAG 43316 |||||||| Sbjct 1608 CAGTCTAG 1615 >seq2282 Length=3013 Score = 244 bits (270), Expect = 3e-60 Identities = 280/373 (75%), Gaps = 9/373 (2%) Strand=Plus/Plus Query 45947 GAGACCACACCGATTCTGACCTGGACACTGCACAACGAGATCGCGATTCCGCCTGACGTC 46006 |||||| |||| || || ||||||||||||| ||||||||| ||| |||| |||| Sbjct 1987 GAGACCTCACCTATCCTTGCCTGGACACTGCAGAACGAGATCCCGA---CGCCGGACGAT 2043 Query 46007 G--CGGCGC-TGCTCACCCAAGGGGAGCAGGCCGTCGCCGCGTTCCAGACGTTCCGGGAC 46063 | | | || ||||| |||| ||| || | || ||| ||||| |||| ||||||||| Sbjct 2044 GTTCAGGGCTTGCTCGTGGAAGGCGAGAAGCCAGTTGCCTCGTTCAAGACTTTCCGGGAC 2103 Query 46064 TCGGCTATCTTCACCACGAAGCGGCTCATCGTGCGGGACGCCCAGGGCATGACAGGACGG 46123 || || | ||||| ||||||||||| ||||| || ||||| |||||| | | || | Sbjct 2104 TCCGCAACATTCACGACGAAGCGGCTGATCGTCCGCGACGCTCAGGGCTTCAGCGGGAAG 2163 Query 46124 AAGGTTGAGATCTACTCCCTCCCATACTCCGCGATCAACATGTGGTCGTCGGAGAACGC- 46182 ||| | ||||||||||| ||||| ||||| | |||||||||||||| | |||||||| Sbjct 2164 AAGATCGAGATCTACTCGCTCCCGTACTCGTCCATCAACATGTGGTCCACCGAGAACGCT 2223 Query 46183 --GGGCAAGCTCGACTTCAACTCGGAGATCGAGCTCTGGACGCGCGCGGGTCACATCAAG 46240 |||| ||| || | | ||| |||| |||||||| ||||| || ||||||||| Sbjct 2224 GGCGGCATGCTAGATCGTGATGCTGAGGTCGAACTCTGGACCCGCGCTGGGCACATCAAG 2283 Query 46241 GTGAAGCTCGGCAAGGGGGCCGACGTGCGCCGCATCGACAGCCTGATCGCCTGGGCTGTC 46300 |||||||||| ||||||||||| | | || ||||| ||||| | |||||||| | Sbjct 2284 GTGAAGCTCGCAAAGGGGGCCGATATCAGACGAATCGATAGCCTCCTGGCCTGGGCCATT 2343 Query 46301 CTGAACGCCCACT 46313 || | ||||||| Sbjct 2344 CTTCAGGCCCACT 2356 >seq2376 Length=2871 Score = 165 bits (182), Expect = 2e-36 Identities = 275/391 (70%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 44397 GGCATGGCGTTCGCCTTCATGGGCGTCCAGCTCGCCGTCTTCGGCGTGTACATGGGGGCC 44456 || || || ||||||||| | || || ||||| || | |||||| | || |||||| Sbjct 1365 GGGATCGCCTTCGCCTTCCTCGGGGTGCAGCTGGCGCTGTTCGGCTTCTATATGGGGATG 1424 Query 44457 TCGTTCGCTCCGAACCACAAGGGCATGCCGATCATCGCGTCCGA--TGCCCGCCTCGACT 44514 |||||||| || ||||||||||||||||||||| | || | || | || |||| Sbjct 1425 TCGTTCGCACCCAACCACAAGGGCATGCCGATCGTGCCGAAGAACATGTCG--CTGGACT 1482 Query 44515 TCTTCACCAAGCAGGTGGGCACCTCCCGCAACATACGCGGAGGCTGGTGGGCCACCTGGC 44574 || || |||||| | | ||| ||||| ||||| | || | | || | Sbjct 1483 TCCTCGAGCGTCAGGTGAGAATGAGCCGGAACATCCGCGGCAACCGGATCGTCGACTTCC 1542 Query 44575 TCATGGGCGGGCTGAACTACCAGATCGAGCACCACCTCTTCCCCAGCATGCCTCGGATCC 44634 | |||||||| || ||||||||||||||||| |||||||||||| ||||| || | Sbjct 1543 TGATGGGCGGCCTCAACTACCAGATCGAGCATCACCTCTTCCCCTCGATGCCGCGCCCGC 1602 Query 44635 ATCTGTCCCAGGCAAGGAA--GATCGTGCGCGAGCACTG-CACCGCAAACGACGTGCCGT 44691 | || ||| || || | |||||| |||| |||| | ||| || | | || | Sbjct 1603 ACCTTCGCCACGC--GGCACCGATCGTCCGCGCTTACTGTCTCCGGCT-CGGCATCCCCT 1659 Query 44692 ACACCGAGACCACACTGCTTCGGTCATACGCCATCGTGATCGACTACCTCAACCGCGTCG 44751 |||||||||| ||||| ||| ||||| |||||| | |||| |||||||||||| Sbjct 1660 ACACCGAGACGGGTCTGCTCGCGTCGTACGCGATCGTGGTGCGCTACATCAACCGCGTCG 1719 Query 44752 GCCTGGCAGCGCGCGACCCCTTCGACTGCCC 44782 |||| | | || ||||||||||||||||| Sbjct 1720 GCCTCGGCGAACGAGACCCCTTCGACTGCCC 1750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148235909621466