Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq1923 260 6e-65 >seq1923 Length=3841 Score = 260 bits (288), Expect = 6e-65 Identities = 452/647 (70%), Gaps = 10/647 (2%) Strand=Plus/Plus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || |||||||| | ||| || || || ||||| ||||| | ||| |||| ||||||||| Sbjct 3179 TCCTCGAACATGATGTACGGGTAACCCGACTCGAACTGGATCTCGGCGAGGGTCTGGAAG 3238 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTAC 60029 | || || || | ||| ||||| ||| | | || | | | | | |||| Sbjct 3239 AACTCGCGCGCATTGATCTTCGTCTTCTTGATACGGGCGTCGTCGACCATCTCGCGGTAC 3298 Query 60030 ATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGGA 60089 ||||||| || |||| || | | | ||||| || | || ||| || || Sbjct 3299 TTCTCGGTGACCGAGATGTCACCGAAGGGCACCCCGTAGACGCGCTCGACGTCGTACGGC 3358 Query 60090 GAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGATA 60149 ||||| ||| ||| |||| | ||| || || |||||||| || || | || Sbjct 3359 GAGAAGAGGTACATGTCCTCGTCGTTCTTCGCCAGCTCGAACGTGATGTCGGGGATGACC 3418 Query 60150 ACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCC 60209 || || || || || ||||| || |||||||||||||||||||| || |||||||| || Sbjct 3419 ACACCCAGCGACAGCGTCTTGATGCGGATCTTCTCGTCGGCGTTCTCGCGCTTGGTGTCA 3478 Query 60210 AGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCTT 60269 |||||| ||||||||||||||||| || || || ||||| || |||||||| | Sbjct 3479 AGGAACCGCAGGATGTCGGGGTGGTGAGCCGACAGGTAGACCGCACCCGCGCCCTGACGG 3538 Query 60270 GCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGACT 60329 || ||||| ||||| | |||| |||||| ||||| || | ||||||||| ||||||| Sbjct 3539 GCGCCCAGCTGGTTGGCGTAGCTGAAGCTGTCTTCGAGGAGCTTCATCACCGGGATGATG 3598 Query 60330 CCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGA 60387 || |||| ||| ||||||| | ||| |||||||| || |||||||||| ||| || | Sbjct 3599 CCCGAGGACTG--GTTCTCGATCTGCTTGATCGGAGCGCCCGCCTCGCGGATGTTCGACA 3656 Query 60388 -ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGAGAGTCCTGAACGATTCGA 60446 || ||| || |||||||| ||||| |||||||| || | | | | | || Sbjct 3657 GCAGCAGCGCC-ACCCCGCCACCGCGCTTGGACAGCTGCAGGGCGGAGTTGATGCCGCGG 3715 Query 60447 CCGATGGACCCCATGGTGTCCT-GAACATCGAGGATGAAGCATGATACTGGCTTGCCTGC 60505 | || ||| ||||| |||||| || | | |||| |||||| || || | | ||| || Sbjct 3716 GCAATCGACTCCATGTTGTCCTCGATCCGC-AGGAGGAAGCACGACACCAGTTCGCC-GC 3773 Query 60506 GTCGAG-AAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAG 60551 | | | ||| | ||||||||| ||||| || || ||||||||| Sbjct 3774 GCTGCGCCTTCCCGGTGTTGAGGAACGTCGGCGTGGCCGGCTGGAAG 3820 Score = 158 bits (174), Expect = 5e-34 Identities = 256/365 (70%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 58452 CGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATG 58511 ||||||||||| | | ||| | ||||||||| |||||||||||||| ||||| ||| Sbjct 2210 CGGATGTAGTAGATGGTCTTGATGCCCTTCTTCCAGGCGTAGATCTGCGCCCGGTTGATG 2269 Query 58512 TCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAA 58571 || ||||| ||||| || || ||||||||||||||| |||| |||||||| || Sbjct 2270 TCGCGCGTGGTCGCGGTGTCCTTGAAGAACAGCGTGAGCGACAGCCCCTGGTCCACGTGC 2329 Query 58572 GGAGATGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCGCTAT 58629 | | ||| | |||||| | || |||| | | ||| ||||| |||| || | Sbjct 2330 TGCGTTGCGGCGGCGTACGTGTCGATGACCTTCTCGTAG--CCGATCTCGTAGGCATCTT 2387 Query 58630 CAATTGATTCTACATTCTCATTGGTCACTCCGTACTGA---GGGTAATAGACTCGACCAA 58686 | | || | |||||| || |||| | || || ||||| ||||| || || | Sbjct 2388 CGTAGTACTCCAGATTCTCGTTCGTCA---TGAACGGAGCCGGGTAGTAGACGCGGCCGA 2444 Query 58687 GCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCAT 58746 |||| || |||||||| | ||| | || | | ||||| ||||| | || | | Sbjct 2445 GCTTGCCTTCCTTGCGGATCTCGATCTTCGACGCGATCGGGTGGATCGACGAGGTCGAGT 2504 Query 58747 GGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATAC 58806 ||| ||||||||||| || || || || || | |||||| |||||||||||||| || | Sbjct 2505 TGTTGATGTACGAGATCGACCCCGTCGGCGGAACCGCCTGCAGGTTCTGGTTGTAGATGC 2564 Query 58807 CATGC 58811 | ||| Sbjct 2565 CGTGC 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225711606433460