Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4983 379 1e-100 seq780 120 1e-22 >seq4983 Length=1217 Score = 379 bits (420), Expect = 1e-100 Identities = 566/797 (71%), Gaps = 21/797 (3%) Strand=Plus/Minus Query 65917 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 65976 |||||||||| || || |||||| ||| |||||| |||| ||| ||| | |||||| Sbjct 850 CCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTTCCCCGCGGCCGGA 791 Query 65977 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 66036 | | |||||||||||||| || || || || ||| | ||| | || || ||| | | Sbjct 790 TCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACTCTGCATGCGATCG 731 Query 66037 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 | || | ||| |||| |||| |||||| | |||||||||||| || | ||||||| Sbjct 730 CGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAGCACGCGCTCGACC 671 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 | || |||||| | |||||| || || ||||| || |||| |||||| |||| Sbjct 670 CCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTGTCGCAGCCCGACA 611 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | || |||||||| || ||||||| ||| | |||||| || || | | | | || Sbjct 610 CGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGAGCGATCGACCTCG 551 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 | || | ||||| || ||||| || |||||| ||| ||| |||| || || || || | Sbjct 550 TGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAGGGTGAGATGGGCG 491 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC---- 66332 | || |||||||| || || || || || ||||| ||||| | |||||||||||| Sbjct 490 ATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGCAAGCTGACCGGTG 431 Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTG---TGGGTGAATCAGCTGCGCGAGAAG 66389 ||| | || ||| || ||||| ||| || | | || ||||||||||||||| Sbjct 430 GGCTCAAT---CAG-ACGAACAC---CACGATGATCTTCATCAACCAGCTGCGCGAGAAG 378 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 ||||| |||| || ||| | ||||||||| ||||||| ||||| ||| ||| Sbjct 377 ATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGCGCTGAAGTTC 321 Query 66450 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCT 66509 ||||| |||||||| |||| |||| | |||| || ||||| || |||||| Sbjct 320 TACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGGTACCGAGGCT 261 Query 66510 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAG 66569 || |||||||||||||| || || || |||||||||||| ||||||| ||| | ||| Sbjct 260 GTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAG 201 Query 66570 GCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAA--CTCCTCGACA 66627 || ||||| |||| ||||||||| || || || || |||| ||| ||| |||| Sbjct 200 GCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGCCTCATCGATT 143 Query 66628 TGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGA 66687 | | ||| | ||| || | |||||||| || ||||||| || ||||| | || Sbjct 142 TCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTACGACGGGGAGC 83 Query 66688 ACATCGGCCAGGGCAAG 66704 | |||||||||||||| Sbjct 82 AGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 120 bits (132), Expect = 1e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 7411 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 7470 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 7471 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 7530 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 7531 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 7590 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 7591 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 7650 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 7651 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 7710 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 7711 ATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 7770 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 7771 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 7830 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 7831 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 7887 Query 66450 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 7888 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 7944 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 66554 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 7945 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 7992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242452790511428